JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNRNP27_chr2_69888956_69910236	1/1	c0001	468	438	94	80	207	12	43	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	c0002	313	1	0	0	1	0	0	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP27_chr2_69888956_69910236	0/0	c0003	468	1	0	0	0	0	1	copy fasta	SNRNP27	chr2	69888956	69910236
SNRNP35_chr12_123453139_123471936	1/1	c0001	741	158	36	37	41	18	24	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	c0002	741	15	14	1	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	c0003	741	9	4	3	0	0	2	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	c0004	741	1	0	0	1	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	c0005	741	1	0	0	1	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	c0006	741	1	0	1	0	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP35_chr12_123453139_123471936	0/0	c0007	741	1	0	0	1	0	0	copy fasta	SNRNP35	chr12	123453139	123471936
SNRNP40_chr1_31254568_31301788	1/1	c0001	1074	345	92	58	151	10	32	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	c0002	1074	8	0	0	8	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP40_chr1_31254568_31301788	0/0	c0003	1074	1	0	0	1	0	0	copy fasta	SNRNP40	chr1	31254568	31301788
SNRNP48_chr6_7585198_7616967	0/0	c0001	1020	165	20	24	101	4	16	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	1/0	c0002	1020	154	33	29	70	7	14	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0003	1020	64	12	17	19	5	11	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/1	c0004	1020	23	14	7	0	0	1	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0005	1020	14	13	1	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0006	1020	2	0	0	2	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0007	1020	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0008	1020	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0009	1020	1	1	0	0	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP48_chr6_7585198_7616967	0/0	c0010	1020	1	0	0	1	0	0	copy fasta	SNRNP48	chr6	7585198	7616967
SNRNP70_chr19_49080451_49113604	1/1	c0001	1314	322	83	62	142	7	26	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	c0002	1314	38	5	10	4	5	14	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	c0003	1314	2	0	0	0	2	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	c0004	1303	1	0	0	1	0	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	c0005	1314	1	0	0	0	0	1	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	c0006	1314	1	0	0	1	0	0	copy fasta	SNRNP70	chr19	49080451	49113604
SNRNP70_chr19_49080451_49113604	0/0	c0007	1314	1	0	0	0	0	1	copy fasta	SNRNP70	chr19	49080451	49113604
SNRPA1_chr15_101276510_101300248	1/1	c0001	768	398	69	73	192	16	46	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0002	768	36	27	9	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0003	768	1	0	1	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0004	768	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0005	768	1	0	0	1	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0006	768	1	0	0	1	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0007	768	1	0	1	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0008	768	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0009	768	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA1_chr15_101276510_101300248	0/0	c0010	768	1	1	0	0	0	0	copy fasta	SNRPA1	chr15	101276510	101300248
SNRPA_chr19_40746203_40770389	1/1	c0001	849	298	58	60	125	13	40	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0002	849	92	31	5	50	3	3	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0003	849	12	0	0	12	0	0	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0004	849	5	2	3	0	0	0	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0005	849	2	0	0	0	0	2	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0006	849	1	0	0	0	0	1	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0007	849	1	1	0	0	0	0	copy fasta	SNRPA	chr19	40746203	40770389
SNRPA_chr19_40746203_40770389	0/0	c0008	849	1	0	0	1	0	0	copy fasta	SNRPA	chr19	40746203	40770389
SNRPB2_chr20_16725026_16747564	1/1	c0001	678	471	98	81	224	18	48	copy fasta	SNRPB2	chr20	16725026	16747564
SNRPB2_chr20_16725026_16747564	0/0	c0002	678	1	0	1	0	0	0	copy fasta	SNRPB2	chr20	16725026	16747564