JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNRPB_chr20_2456642_2475789	1/1	c0001	696	360	79	61	164	10	44	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	c0002	696	10	10	0	0	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	c0003	696	3	2	1	0	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPB_chr20_2456642_2475789	0/0	c0004	696	1	1	0	0	0	0	copy fasta	SNRPB	chr20	2456642	2475789
SNRPC_chr6_34752505_34778857	1/1	c0001	480	360	74	58	172	10	44	copy fasta	SNRPC	chr6	34752505	34778857
SNRPC_chr6_34752505_34778857	0/0	c0002	480	5	5	0	0	0	0	copy fasta	SNRPC	chr6	34752505	34778857
SNRPC_chr6_34752505_34778857	0/0	c0003	480	3	1	2	0	0	0	copy fasta	SNRPC	chr6	34752505	34778857
SNRPD1_chr18_21607314_21638520	1/1	c0001	360	358	92	66	156	10	32	copy fasta	SNRPD1	chr18	21607314	21638520
SNRPD2_chr19_45682460_45696953	1/1	c0001	357	435	89	82	204	14	44	copy fasta	SNRPD2	chr19	45682460	45696953
SNRPD2_chr19_45682460_45696953	0/0	c0002	357	1	0	0	0	0	1	copy fasta	SNRPD2	chr19	45682460	45696953
SNRPD2_chr19_45682460_45696953	0/0	c0003	357	1	1	0	0	0	0	copy fasta	SNRPD2	chr19	45682460	45696953
SNRPD2_chr19_45682460_45696953	0/0	c0004	357	1	0	0	0	0	1	copy fasta	SNRPD2	chr19	45682460	45696953
SNRPD3_chr22_24550999_24579971	0/1	c0001	381	268	38	54	130	12	33	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	1/0	c0002	381	131	52	16	43	4	15	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPD3_chr22_24550999_24579971	0/0	c0003	381	1	0	0	1	0	0	copy fasta	SNRPD3	chr22	24550999	24579971
SNRPE_chr1_203856599_203876152	1/1	c0001	279	416	96	78	184	18	38	copy fasta	SNRPE	chr1	203856599	203876152
SNRPF_chr12_95853952_95871140	1/1	c0001	261	440	96	72	210	14	46	copy fasta	SNRPF	chr12	95853952	95871140
SNRPG_chr2_70276362_70298740	0/0	c0001	231	423	96	68	205	10	44	copy fasta	SNRPG	chr2	70276362	70298740
SNRPG_chr2_70276362_70298740	0/0	c0002	231	1	0	0	1	0	0	copy fasta	SNRPG	chr2	70276362	70298740
SNRPN_chr15_24949987_24983723	1/1	c0001	723	342	84	68	130	18	40	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	c0002	723	3	3	0	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNRPN_chr15_24949987_24983723	0/0	c0003	723	1	1	0	0	0	0	copy fasta	SNRPN	chr15	24949987	24983723
SNTA1_chr20_33402957_33448763	1/1	c0001	1518	330	77	54	141	16	40	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0002	1518	3	3	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0003	1518	3	3	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0004	1518	3	3	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0005	1518	2	2	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0006	1518	2	0	2	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0007	1518	2	2	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0008	1518	1	1	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0010	1518	1	1	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0011	1518	1	1	0	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0012	1518	1	0	1	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0013	1518	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0014	1518	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0015	1518	1	0	0	1	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTA1_chr20_33402957_33448763	0/0	c0016	1518	1	0	1	0	0	0	copy fasta	SNTA1	chr20	33402957	33448763
SNTB1_chr8_120530756_120817046	1/1	c0001	1617	220	55	41	92	4	26	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0002	1617	13	5	3	3	0	2	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0003	1617	7	7	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0004	1623	3	3	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0005	1617	2	0	0	2	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0006	1617	2	1	1	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0007	1617	2	2	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0008	1617	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0009	1617	1	0	1	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0010	1617	1	0	0	1	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0011	1617	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046
SNTB1_chr8_120530756_120817046	0/0	c0012	1617	1	1	0	0	0	0	copy fasta	SNTB1	chr8	120530756	120817046