JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNTB2_chr16_69182164_69314052	1/0	c0001	1623	152	52	25	51	4	19	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/1	c0002	1623	61	31	11	6	3	9	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	c0003	1623	3	0	2	0	1	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	c0004	1645	1	0	0	1	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTB2_chr16_69182164_69314052	0/0	c0005	1623	1	1	0	0	0	0	copy fasta	SNTB2	chr16	69182164	69314052
SNTG1_chr8_49906407_50801692	0/0	c0001	1554	69	42	7	9	2	9	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	c0002	1554	33	12	7	7	0	7	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	c0003	1554	2	2	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	c0004	1554	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG1_chr8_49906407_50801692	0/0	c0005	1554	1	1	0	0	0	0	copy fasta	SNTG1	chr8	49906407	50801692
SNTG2_chr2_945849_1372613	0/0	c0001	1620	27	2	12	4	5	4	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0002	1620	26	7	6	6	1	6	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0003	1620	26	1	7	6	4	8	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0004	1620	16	10	1	3	0	2	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	1/0	c0005	1620	11	0	2	3	1	4	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0006	1620	10	6	2	0	2	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0007	1620	10	6	2	1	0	1	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0008	1620	9	4	3	0	1	1	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0009	1620	6	3	1	2	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0010	1620	5	1	0	2	0	2	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0011	1620	4	0	0	4	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0012	1620	4	2	2	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0013	1620	3	2	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0014	1620	3	1	0	0	0	2	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0015	1620	3	2	1	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0016	1620	3	3	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0017	1620	2	2	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0018	1620	2	2	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0019	1620	2	0	1	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0020	1620	2	0	2	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0021	1620	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0022	1620	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0023	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0024	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0025	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0026	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0027	1620	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0028	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0029	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0030	1620	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0031	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0032	1620	1	0	0	1	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0033	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/1	c0034	1620	1	0	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0035	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTG2_chr2_945849_1372613	0/0	c0036	1620	1	1	0	0	0	0	copy fasta	SNTG2	chr2	945849	1372613
SNTN_chr3_63647675_63670212	1/1	c0001	444	448	94	72	220	16	44	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	c0002	444	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNTN_chr3_63647675_63670212	0/0	c0003	444	1	1	0	0	0	0	copy fasta	SNTN	chr3	63647675	63670212
SNU13_chr22_41668933_41693867	1/1	c0001	387	359	83	68	147	16	43	copy fasta	SNU13	chr22	41668933	41693867