JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP9A_chr20_51591514_51773390	0/0	c0008	3144	2	0	0	2	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0009	3144	2	0	0	2	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/1	c0010	3144	1	0	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0011	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0012	3144	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0013	3144	1	0	0	1	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0014	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0015	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0016	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0017	3144	1	0	0	0	1	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0018	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0019	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0020	3144	1	1	0	0	0	0	copy fasta	ATP9A	chr20	51591514	51773390
ATP9A_chr20_51591514_51773390	0/0	c0021	3144	1	0	0	0	0	1	copy fasta	ATP9A	chr20	51591514	51773390
ATP9B_chr18_79064394_79383283	0/1	c0001	3444	84	12	20	41	3	7	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0002	3444	76	5	12	40	6	13	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0003	3444	29	0	4	22	1	2	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	1/0	c0004	3444	24	12	5	4	0	2	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0005	3444	14	8	0	6	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0006	3444	11	8	1	2	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0007	3444	7	6	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0008	3444	7	1	3	0	2	1	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0009	3444	5	5	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0010	3444	4	4	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0011	3444	3	3	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0012	3444	3	3	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0013	3444	2	0	2	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0014	3444	2	2	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0015	3444	2	0	0	2	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0016	3444	2	2	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0017	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0018	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0019	3444	1	0	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0020	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0021	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0022	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0023	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0024	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0025	3444	1	0	0	0	1	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0026	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0027	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0028	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0029	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0030	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0031	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0032	3444	1	0	1	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0033	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0034	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0035	3444	1	0	0	1	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0036	3444	1	0	0	0	1	0	copy fasta	ATP9B	chr18	79064394	79383283