JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNU13_chr22_41668933_41693867	0/0	c0002	387	17	5	4	7	0	1	copy fasta	SNU13	chr22	41668933	41693867
SNUPN_chr15_75593086_75630725	1/1	c0001	1083	288	72	56	125	11	22	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0002	1083	22	0	1	19	0	2	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0003	1083	18	3	7	0	1	7	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0004	1083	5	0	1	4	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0005	1083	4	0	0	4	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0006	1083	3	2	1	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0007	1083	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0008	1083	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0009	1083	1	0	0	0	0	1	copy fasta	SNUPN	chr15	75593086	75630725
SNUPN_chr15_75593086_75630725	0/0	c0010	1083	1	1	0	0	0	0	copy fasta	SNUPN	chr15	75593086	75630725
SNURF_chr15_24949987_24973821	1/1	c0001	216	383	88	72	159	18	44	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	c0002	216	2	2	0	0	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNURF_chr15_24949987_24973821	0/0	c0003	228	1	0	0	1	0	0	copy fasta	SNURF	chr15	24949987	24973821
SNW1_chr14_77712599_77766156	0/0	c0001	1611	220	57	36	90	9	28	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	1/0	c0002	1611	70	8	10	44	3	4	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/1	c0003	1611	69	24	15	19	6	4	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	c0004	1611	4	4	0	0	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	c0005	1587	1	0	0	1	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	c0006	1611	1	0	1	0	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNW1_chr14_77712599_77766156	0/0	c0007	1611	1	1	0	0	0	0	copy fasta	SNW1	chr14	77712599	77766156
SNX10_chr7_26286862_26379383	1/1	c0001	606	389	92	66	169	16	44	copy fasta	SNX10	chr7	26286862	26379383
SNX10_chr7_26286862_26379383	0/0	c0002	606	1	0	0	1	0	0	copy fasta	SNX10	chr7	26286862	26379383
SNX11_chr17_48102766_48128601	1/1	c0001	813	415	92	70	193	18	40	copy fasta	SNX11	chr17	48102766	48128601
SNX11_chr17_48102766_48128601	0/0	c0002	813	1	0	0	1	0	0	copy fasta	SNX11	chr17	48102766	48128601
SNX12_chrX_71054247_71073334	1/1	c0001	489	291	69	60	122	9	29	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	c0002	489	17	5	2	9	0	1	copy fasta	SNX12	chrX	71054247	71073334
SNX12_chrX_71054247_71073334	0/0	c0003	489	1	0	0	1	0	0	copy fasta	SNX12	chrX	71054247	71073334
SNX13_chr7_17785761_17945494	0/1	c0001	2874	228	58	43	90	10	26	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	1/0	c0002	2874	94	9	21	50	4	9	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0003	2874	4	0	0	4	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0004	2874	3	3	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0005	2874	2	0	2	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0006	2874	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0007	2874	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0008	2874	1	0	1	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0009	2874	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0010	2874	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0011	2874	1	1	0	0	0	0	copy fasta	SNX13	chr7	17785761	17945494
SNX13_chr7_17785761_17945494	0/0	c0012	2874	1	0	0	0	0	1	copy fasta	SNX13	chr7	17785761	17945494
SNX14_chr6_85500496_85598858	1/0	c0001	2841	347	84	56	163	9	34	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/1	c0002	2841	5	0	2	0	2	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	c0003	2841	4	4	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	c0004	2841	1	0	0	1	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	c0005	2841	1	1	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	c0006	2841	1	1	0	0	0	0	copy fasta	SNX14	chr6	85500496	85598858
SNX14_chr6_85500496_85598858	0/0	c0007	2841	1	0	0	0	1	0	copy fasta	SNX14	chr6	85500496	85598858
SNX15_chr11_65022439_65045572	1/0	c0001	1029	147	37	20	70	4	15	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/1	c0002	1029	103	22	29	34	9	8	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0003	1029	48	22	9	6	1	10	copy fasta	SNX15	chr11	65022439	65045572