JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNX15_chr11_65022439_65045572	0/0	c0004	1029	22	10	2	9	0	1	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0005	1029	7	0	0	7	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0006	1029	5	5	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0007	1029	2	2	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0008	1029	2	0	0	2	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0009	1029	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX15_chr11_65022439_65045572	0/0	c0010	1029	1	1	0	0	0	0	copy fasta	SNX15	chr11	65022439	65045572
SNX16_chr8_81794583_81847185	1/1	c0001	1035	230	75	51	61	7	34	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	c0002	1035	68	2	18	33	3	12	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	c0003	1035	3	3	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	c0004	1035	2	2	0	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	c0005	1035	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	c0006	1035	1	0	0	1	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX16_chr8_81794583_81847185	0/0	c0007	1015	1	0	1	0	0	0	copy fasta	SNX16	chr8	81794583	81847185
SNX17_chr2_27365616_27382535	1/1	c0001	1413	356	74	69	155	14	42	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0002	1413	6	0	0	6	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0003	1413	3	3	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0004	1413	2	2	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0005	1413	1	0	0	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0006	1413	1	0	0	1	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0007	1413	1	0	1	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0008	1413	1	0	0	0	0	1	copy fasta	SNX17	chr2	27365616	27382535
SNX17_chr2_27365616_27382535	0/0	c0009	1413	1	1	0	0	0	0	copy fasta	SNX17	chr2	27365616	27382535
SNX18_chr5_54512759_54551586	0/0	c0001	1875	130	25	22	61	1	21	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0002	1875	81	15	14	49	0	3	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0003	1875	60	18	13	13	7	9	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0004	1875	57	5	7	38	1	6	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/1	c0005	1875	27	4	9	5	6	2	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0006	1875	10	6	4	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	1/0	c0007	1875	9	6	1	0	1	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0008	1875	4	4	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0009	1875	3	0	1	0	0	2	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0010	1875	1	0	1	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0011	1875	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0012	1875	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0013	1875	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0014	1875	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0015	1875	1	1	0	0	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0016	1875	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0017	1875	1	0	0	1	0	0	copy fasta	SNX18	chr5	54512759	54551586
SNX18_chr5_54512759_54551586	0/0	c0018	1875	1	0	0	0	0	1	copy fasta	SNX18	chr5	54512759	54551586
SNX19_chr11_130861250_130921479	0/0	c0001	2979	165	24	31	72	7	31	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0002	2979	80	1	21	50	3	5	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0003	2979	53	6	5	40	1	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0004	2979	16	16	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0005	2979	16	5	1	8	1	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0006	2979	15	13	1	0	1	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0007	2979	14	0	0	14	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0008	2979	11	11	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0009	2979	7	5	2	0	0	0	copy fasta	SNX19	chr11	130861250	130921479