JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNX19_chr11_130861250_130921479	0/1	c0010	2979	6	0	2	0	1	2	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0011	2979	6	5	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0012	2979	4	0	0	4	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0013	2979	2	0	0	2	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0014	2979	2	1	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0015	2979	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0016	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0017	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0018	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0019	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0020	2979	1	0	1	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0021	2979	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0022	2979	1	0	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	1/0	c0023	2979	1	0	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0024	2979	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0025	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0026	2979	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0027	2979	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0028	2979	1	0	0	1	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0029	2979	1	0	0	0	0	1	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0030	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX19_chr11_130861250_130921479	0/0	c0031	2979	1	1	0	0	0	0	copy fasta	SNX19	chr11	130861250	130921479
SNX1_chr15_64090982_64149231	1/1	c0001	1569	134	55	18	41	5	13	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0002	1569	124	36	24	45	6	13	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0003	1569	5	0	2	0	1	2	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0004	1569	3	3	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0005	1569	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0006	1569	1	1	0	0	0	0	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0007	1569	1	0	0	0	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX1_chr15_64090982_64149231	0/0	c0008	1569	1	0	0	0	0	1	copy fasta	SNX1	chr15	64090982	64149231
SNX20_chr16_50666629_50686312	1/1	c0001	951	314	50	67	135	16	44	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0002	951	56	22	3	30	1	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0003	951	18	17	1	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0004	951	14	0	13	0	1	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0005	951	7	7	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0006	951	3	3	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0007	951	2	0	0	2	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0008	951	1	0	0	1	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX20_chr16_50666629_50686312	0/0	c0009	951	1	1	0	0	0	0	copy fasta	SNX20	chr16	50666629	50686312
SNX21_chr20_45828799_45848276	1/0	c0001	1122	199	46	31	89	10	22	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/1	c0002	1122	143	8	36	75	8	15	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0003	1122	34	0	2	32	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0004	1122	32	29	3	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0005	1122	5	5	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0006	1122	4	4	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0007	1122	3	3	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0008	1122	3	2	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0009	1122	2	0	0	0	0	2	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0010	1122	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0011	1122	1	0	0	0	0	1	copy fasta	SNX21	chr20	45828799	45848276