JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNX21_chr20_45828799_45848276	0/0	c0012	1122	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0013	1122	1	1	0	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0014	1122	1	0	1	0	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0015	1122	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX21_chr20_45828799_45848276	0/0	c0016	1122	1	0	0	1	0	0	copy fasta	SNX21	chr20	45828799	45848276
SNX22_chr15_64146731_64162481	1/1	c0001	582	342	95	58	126	16	45	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0002	582	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0003	582	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0004	582	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0005	582	1	0	1	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0006	582	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0007	582	1	0	0	0	0	1	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0008	582	1	0	0	1	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX22_chr15_64146731_64162481	0/0	c0009	582	1	1	0	0	0	0	copy fasta	SNX22	chr15	64146731	64162481
SNX24_chr5_122840613_123014205	1/1	c0001	510	330	84	64	136	14	30	copy fasta	SNX24	chr5	122840613	123014205
SNX25_chr4_185204598_185368966	1/1	c0001	3015	212	54	50	75	11	20	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0002	3015	22	21	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0003	3015	19	0	1	15	0	3	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0004	3015	3	3	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0005	3015	3	0	0	3	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0006	3015	2	2	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0007	3015	2	2	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0008	3015	2	0	1	0	0	1	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0009	3015	1	0	0	1	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0010	3015	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0011	3015	1	0	0	0	1	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0012	3015	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0013	3015	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0014	3015	1	0	0	1	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0015	3015	1	0	0	1	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0016	3015	1	0	1	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0017	3015	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0018	3015	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX25_chr4_185204598_185368966	0/0	c0019	3015	1	1	0	0	0	0	copy fasta	SNX25	chr4	185204598	185368966
SNX27_chr1_151607050_151704080	1/1	c0001	1626	353	89	56	158	12	36	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	c0002	1626	6	0	0	6	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	c0003	1626	2	2	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	c0004	1626	2	2	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	c0005	1626	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	c0006	1626	1	1	0	0	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX27_chr1_151607050_151704080	0/0	c0007	1626	1	0	0	1	0	0	copy fasta	SNX27	chr1	151607050	151704080
SNX29_chr16_11971734_12579287	0/0	c0001	2442	58	19	15	15	2	7	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0002	2442	35	13	7	12	1	2	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	1/0	c0003	2442	31	9	12	5	2	2	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/1	c0004	2442	24	8	4	4	1	6	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0005	2442	4	3	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0006	2442	4	4	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0007	2442	2	2	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0008	2442	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0009	2442	1	0	0	0	1	0	copy fasta	SNX29	chr16	11971734	12579287