JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNX29_chr16_11971734_12579287	0/0	c0010	2442	1	0	0	0	0	1	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0011	2442	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0012	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0013	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0014	2442	1	0	0	0	1	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0015	2442	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0016	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0017	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0018	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0019	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0020	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0021	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0022	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0023	2442	1	0	1	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0024	2442	1	0	0	1	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX29_chr16_11971734_12579287	0/0	c0025	2442	1	1	0	0	0	0	copy fasta	SNX29	chr16	11971734	12579287
SNX2_chr5_122770080_122839543	1/1	c0001	1560	337	89	66	135	12	33	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	c0002	1560	30	0	2	25	2	1	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	c0003	1560	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	c0004	1560	1	0	0	1	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	c0005	1560	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	c0006	1560	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX2_chr5_122770080_122839543	0/0	c0007	1560	1	1	0	0	0	0	copy fasta	SNX2	chr5	122770080	122839543
SNX30_chr9_112745760_112879987	0/0	c0001	1314	238	37	49	112	12	28	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0002	1314	61	33	6	20	0	2	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/1	c0003	1314	23	0	5	14	2	1	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0004	1314	5	1	1	0	0	3	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	1/0	c0005	1314	4	0	0	0	3	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0006	1314	2	2	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0007	1314	2	0	0	2	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0008	1314	1	0	1	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0009	1314	1	1	0	0	0	0	copy fasta	SNX30	chr9	112745760	112879987
SNX30_chr9_112745760_112879987	0/0	c0010	1314	1	0	0	0	1	0	copy fasta	SNX30	chr9	112745760	112879987
SNX31_chr8_100567889_100654665	1/0	c0001	1323	82	10	14	44	4	9	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0002	1323	51	14	12	16	2	7	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0003	1323	35	17	9	1	0	8	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/1	c0004	1323	31	7	5	11	3	4	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0005	1323	25	5	8	8	0	4	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0006	1323	20	5	6	5	1	3	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0007	1323	18	10	2	5	0	1	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0008	1323	16	11	5	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0009	1322	4	3	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0010	1322	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0011	1323	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0012	1322	3	3	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0013	1323	2	0	0	0	0	2	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0014	1323	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0015	1489	1	0	0	1	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0016	1488	1	0	0	1	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0017	1459	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665