JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNX31_chr8_100567889_100654665	0/0	c0018	1457	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0019	1456	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0020	1323	1	0	0	0	1	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0021	1323	1	0	1	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0022	1323	1	0	0	0	1	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0023	1322	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX31_chr8_100567889_100654665	0/0	c0024	1323	1	1	0	0	0	0	copy fasta	SNX31	chr8	100567889	100654665
SNX32_chr11_65828963_65858701	1/1	c0001	1212	347	85	56	153	13	38	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0002	1212	28	2	14	11	1	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0003	1212	4	0	0	0	0	4	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0004	1212	2	0	0	2	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0005	1212	2	0	0	2	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0006	1212	2	0	0	2	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0007	1212	2	0	0	2	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0008	1212	1	0	0	1	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0009	1212	1	1	0	0	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX32_chr11_65828963_65858701	0/0	c0010	1212	1	0	0	1	0	0	copy fasta	SNX32	chr11	65828963	65858701
SNX33_chr15_75642912_75667301	1/1	c0001	1725	392	71	68	190	14	47	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	c0002	1725	19	17	2	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	c0003	1725	4	4	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	c0004	1725	2	2	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	c0005	1725	1	1	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	c0006	1725	1	0	0	0	0	1	copy fasta	SNX33	chr15	75642912	75667301
SNX33_chr15_75642912_75667301	0/0	c0007	1725	1	1	0	0	0	0	copy fasta	SNX33	chr15	75642912	75667301
SNX3_chr6_108206222_108266040	1/1	c0001	489	354	98	52	150	12	40	copy fasta	SNX3	chr6	108206222	108266040
SNX3_chr6_108206222_108266040	0/0	c0002	489	2	0	0	2	0	0	copy fasta	SNX3	chr6	108206222	108266040
SNX4_chr3_125441650_125525202	1/1	c0001	1353	347	88	72	141	10	34	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	c0002	1353	5	0	0	5	0	0	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	c0003	1353	4	0	0	4	0	0	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	c0004	1353	3	0	0	3	0	0	copy fasta	SNX4	chr3	125441650	125525202
SNX4_chr3_125441650_125525202	0/0	c0005	1353	1	0	0	1	0	0	copy fasta	SNX4	chr3	125441650	125525202
SNX5_chr20_17936600_17973794	1/0	c0001	1215	266	69	58	101	12	25	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/1	c0002	1215	111	10	16	63	4	17	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	c0003	1215	11	11	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX5_chr20_17936600_17973794	0/0	c0004	1215	6	6	0	0	0	0	copy fasta	SNX5	chr20	17936600	17973794
SNX6_chr14_34556093_34635148	0/0	c0001	1221	231	57	48	93	8	25	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	1/1	c0002	1221	90	30	10	33	4	11	copy fasta	SNX6	chr14	34556093	34635148
SNX6_chr14_34556093_34635148	0/0	c0003	1221	1	1	0	0	0	0	copy fasta	SNX6	chr14	34556093	34635148
SNX7_chr1_98656721_98765500	0/0	c0001	1356	246	54	47	110	8	27	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/1	c0002	1356	56	17	11	13	2	12	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	c0003	1356	54	1	3	49	0	1	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	c0004	1356	12	9	1	2	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	c0005	1356	4	0	0	4	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	1/0	c0006	1356	4	3	0	0	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	c0007	1356	1	0	0	1	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX7_chr1_98656721_98765500	0/0	c0008	1356	1	0	0	1	0	0	copy fasta	SNX7	chr1	98656721	98765500
SNX8_chr7_2246770_2319441	0/1	c0001	1398	254	49	58	100	13	33	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	1/0	c0002	1398	47	4	4	32	1	5	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0003	1398	23	21	1	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0004	1398	12	10	2	0	0	0	copy fasta	SNX8	chr7	2246770	2319441