JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SNX8_chr7_2246770_2319441	0/0	c0005	1398	9	0	0	8	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0006	1398	6	0	2	0	0	4	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0007	1398	5	5	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0008	1383	2	0	0	2	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0009	1398	2	2	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0010	1398	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0011	1398	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0012	1398	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0013	1398	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0014	1398	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0015	1398	1	0	0	1	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0016	1398	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0017	1427	1	0	1	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0018	1398	1	0	0	0	0	1	copy fasta	SNX8	chr7	2246770	2319441
SNX8_chr7_2246770_2319441	0/0	c0019	1398	1	1	0	0	0	0	copy fasta	SNX8	chr7	2246770	2319441
SNX9_chr6_157818246_157950077	1/1	c0001	1788	200	58	32	77	10	21	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0002	1779	55	0	10	36	2	7	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0003	1788	29	14	4	1	2	8	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0004	1788	4	0	0	4	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0005	1788	2	0	1	0	0	1	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0006	1788	2	2	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0007	1779	2	2	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0008	1788	2	0	0	2	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0009	1788	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0010	1788	1	1	0	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0011	1788	1	0	0	0	0	1	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0012	1788	1	0	0	1	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0013	1788	1	0	1	0	0	0	copy fasta	SNX9	chr6	157818246	157950077
SNX9_chr6_157818246_157950077	0/0	c0014	1788	1	0	0	1	0	0	copy fasta	SNX9	chr6	157818246	157950077
SOAT1_chr1_179288797_179363680	1/1	c0001	1653	127	38	29	36	7	15	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0002	1653	101	10	17	59	3	12	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0003	1653	71	2	8	49	2	10	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0004	1653	28	22	6	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0005	1653	18	4	7	7	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0006	1653	11	0	8	0	3	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0007	1653	4	0	0	4	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0008	1653	3	3	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0009	1653	3	2	1	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0010	1653	2	2	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0011	1653	2	0	2	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0012	1653	2	0	0	2	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0013	1653	2	0	2	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0014	1653	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0015	1653	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0016	1653	1	0	0	0	0	1	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0017	1653	1	0	0	1	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0018	1653	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0019	1653	1	0	0	0	1	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0020	1653	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680
SOAT1_chr1_179288797_179363680	0/0	c0021	1653	1	1	0	0	0	0	copy fasta	SOAT1	chr1	179288797	179363680