JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOAT2_chr12_53098486_53129535	1/1	c0001	1569	231	48	38	105	4	34	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0002	1569	68	14	9	43	1	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0003	1569	60	1	12	41	1	5	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0004	1569	15	15	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0005	1569	11	9	1	0	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0006	1569	6	0	1	4	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0007	1569	5	0	3	2	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0008	1569	5	5	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0009	1569	4	3	0	1	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0010	1569	1	0	0	1	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0011	1569	1	1	0	0	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0012	1569	1	0	0	0	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0013	1584	1	0	0	1	0	0	copy fasta	SOAT2	chr12	53098486	53129535
SOAT2_chr12_53098486_53129535	0/0	c0014	1569	1	0	0	0	0	1	copy fasta	SOAT2	chr12	53098486	53129535
SOBP_chr6_107485117_107666306	0/1	c0001	2622	279	72	34	138	8	26	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	1/0	c0002	2622	5	2	2	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	c0003	2622	5	5	0	0	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	c0004	2622	4	1	0	3	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	c0005	2622	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	c0006	2622	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOBP_chr6_107485117_107666306	0/0	c0007	2622	1	0	0	1	0	0	copy fasta	SOBP	chr6	107485117	107666306
SOCS1_chr16_11249417_11261204	1/1	c0001	636	430	90	76	202	18	42	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	c0002	636	1	1	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS1_chr16_11249417_11261204	0/0	c0003	636	1	1	0	0	0	0	copy fasta	SOCS1	chr16	11249417	11261204
SOCS2_chr12_93567675_93581745	1/1	c0001	597	414	83	78	193	16	42	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	c0002	597	14	14	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	c0003	597	8	0	0	8	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	c0004	597	1	1	0	0	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS2_chr12_93567675_93581745	0/0	c0005	597	1	0	0	1	0	0	copy fasta	SOCS2	chr12	93567675	93581745
SOCS3_chr17_78351778_78365077	1/1	c0001	678	463	100	85	215	16	45	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	c0002	678	3	0	0	3	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	c0003	678	1	0	0	0	0	1	copy fasta	SOCS3	chr17	78351778	78365077
SOCS3_chr17_78351778_78365077	0/0	c0004	678	1	0	1	0	0	0	copy fasta	SOCS3	chr17	78351778	78365077
SOCS4_chr14_55022236_55054489	1/1	c0001	1323	375	85	65	170	14	39	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	c0002	1323	9	8	1	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	c0003	1323	6	1	2	0	0	3	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	c0004	1323	2	0	0	0	2	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS4_chr14_55022236_55054489	0/0	c0005	1323	2	2	0	0	0	0	copy fasta	SOCS4	chr14	55022236	55054489
SOCS5_chr2_46694295_46768129	1/0	c0001	1611	277	70	36	141	6	23	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/1	c0002	1611	70	14	22	15	7	11	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0003	1611	21	2	8	7	2	2	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0004	1611	7	0	3	1	1	2	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0005	1611	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0006	1611	1	0	0	1	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0007	1611	1	0	0	1	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0008	1611	1	1	0	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS5_chr2_46694295_46768129	0/0	c0009	1611	1	0	1	0	0	0	copy fasta	SOCS5	chr2	46694295	46768129
SOCS6_chr18_70284045_70335199	1/0	c0001	1608	263	77	35	103	11	36	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/1	c0002	1608	39	3	7	20	1	7	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0003	1608	30	6	15	7	0	2	copy fasta	SOCS6	chr18	70284045	70335199