JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOCS6_chr18_70284045_70335199	0/0	c0004	1608	13	0	0	8	2	3	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0005	1608	5	5	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0006	1608	2	0	2	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0007	1608	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0008	1608	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0009	1608	1	0	0	1	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0010	1608	1	0	1	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0011	1608	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS6_chr18_70284045_70335199	0/0	c0012	1608	1	1	0	0	0	0	copy fasta	SOCS6	chr18	70284045	70335199
SOCS7_chr17_38346844_38410593	0/1	c0001	1938	185	42	31	77	8	26	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0002	1938	80	32	19	21	4	4	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0003	1941	11	11	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0004	1938	3	3	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0005	1938	3	0	0	3	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0006	1941	2	2	0	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0007	1938	2	0	0	0	2	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0008	1938	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0009	1938	1	0	0	1	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOCS7_chr17_38346844_38410593	0/0	c0010	1938	1	0	1	0	0	0	copy fasta	SOCS7	chr17	38346844	38410593
SOD1_chr21_31654693_31673931	1/1	c0001	465	425	92	78	189	16	48	copy fasta	SOD1	chr21	31654693	31673931
SOD1_chr21_31654693_31673931	0/0	c0002	465	1	0	0	1	0	0	copy fasta	SOD1	chr21	31654693	31673931
SOD2_chr6_159664069_159698241	1/0	c0001	669	244	62	33	118	8	22	copy fasta	SOD2	chr6	159664069	159698241
SOD2_chr6_159664069_159698241	0/1	c0002	669	120	34	41	24	4	16	copy fasta	SOD2	chr6	159664069	159698241
SOD3_chr4_24790573_24805842	1/0	c0001	723	173	66	29	59	1	17	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/1	c0002	723	144	11	43	61	10	18	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0003	723	114	7	9	85	5	8	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0004	723	13	0	3	7	1	2	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0005	723	11	10	0	0	0	1	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0006	723	2	2	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0007	723	2	0	0	2	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0008	723	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0009	723	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0010	723	1	0	1	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0011	723	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0012	723	1	0	0	0	1	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0013	723	1	1	0	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOD3_chr4_24790573_24805842	0/0	c0014	723	1	0	1	0	0	0	copy fasta	SOD3	chr4	24790573	24805842
SOGA1_chr20_36772447_36868538	0/0	c0001	4986	158	39	25	66	11	17	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/1	c0002	4986	49	16	17	2	4	9	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0003	4986	12	3	7	0	1	1	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0004	4986	10	7	3	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0005	4986	10	0	8	0	0	2	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0006	4986	7	0	0	7	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0007	4986	5	0	0	5	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0008	4986	4	0	4	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0009	4986	4	4	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0010	4989	3	0	0	0	0	3	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0011	4986	3	2	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0012	4986	2	2	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0013	4986	2	2	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538