JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOGA1_chr20_36772447_36868538	0/0	c0014	4986	2	0	0	0	0	2	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0015	4986	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0016	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0017	4986	1	0	1	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0018	4986	1	0	0	1	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0019	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0020	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0021	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0022	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0023	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	0/0	c0024	4986	1	1	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA1_chr20_36772447_36868538	1/0	c0025	4986	1	0	0	0	0	0	copy fasta	SOGA1	chr20	36772447	36868538
SOGA3_chr6_127467974_127524335	1/0	c0001	2844	163	55	29	45	9	24	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0002	2844	125	8	30	74	3	10	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0003	2844	18	17	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0004	2844	5	5	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0005	2844	4	4	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0006	2844	4	0	4	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0007	2844	3	2	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0008	2844	3	0	0	3	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0009	2844	3	0	1	1	0	1	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0010	2844	2	2	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0011	2844	2	0	2	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0012	2844	2	0	0	2	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0013	2844	2	0	0	2	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0014	2844	2	0	2	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0015	2844	1	0	0	0	0	1	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/1	c0016	2844	1	0	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0017	2844	1	1	0	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0018	2844	1	0	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0019	2844	1	0	0	1	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0020	2844	1	0	1	0	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0021	2844	1	0	0	1	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOGA3_chr6_127467974_127524335	0/0	c0022	2844	1	0	0	1	0	0	copy fasta	SOGA3	chr6	127467974	127524335
SOHLH1_chr9_135688407_135704481	0/0	c0001	1164	277	51	57	119	11	39	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0002	1164	70	5	7	54	1	3	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	1/0	c0003	1164	27	15	4	1	0	6	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0004	1164	21	16	4	0	1	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0005	1164	2	2	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/1	c0006	1164	2	0	1	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0007	1164	2	0	2	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0008	1164	2	0	0	2	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0009	1164	2	2	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0010	1164	2	1	1	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0011	1164	1	0	0	0	1	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0012	1164	1	0	1	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0013	1164	1	0	1	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0014	1164	1	1	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0015	1164	1	0	0	0	0	1	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0016	1164	1	0	0	0	0	1	copy fasta	SOHLH1	chr9	135688407	135704481