JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATP9B_chr18_79064394_79383283	0/0	c0037	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0038	3444	1	1	0	0	0	0	copy fasta	ATP9B	chr18	79064394	79383283
ATP9B_chr18_79064394_79383283	0/0	c0039	3444	1	0	0	0	0	1	copy fasta	ATP9B	chr18	79064394	79383283
ATPAF1_chr1_46627737_46673364	0/0	c0001	987	358	84	51	183	8	32	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	1/1	c0002	987	51	9	7	15	4	14	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	c0003	987	2	0	2	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF1_chr1_46627737_46673364	0/0	c0004	987	1	1	0	0	0	0	copy fasta	ATPAF1	chr1	46627737	46673364
ATPAF2_chr17_18013021_18044168	1/1	c0001	870	306	81	68	114	11	30	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	c0002	870	10	0	0	10	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	c0003	870	6	0	3	0	1	2	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	c0004	870	3	3	0	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	c0005	870	2	0	0	2	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPAF2_chr17_18013021_18044168	0/0	c0006	870	1	0	1	0	0	0	copy fasta	ATPAF2	chr17	18013021	18044168
ATPSCKMT_chr5_10220507_10254888	0/0	c0001	702	122	7	14	85	5	11	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0002	702	95	16	30	17	9	23	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	1/1	c0003	702	82	33	16	19	3	9	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0004	702	21	20	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0005	702	15	10	1	4	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0006	702	6	5	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0007	702	5	5	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0008	702	5	0	4	0	1	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0009	702	2	0	0	2	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0010	702	1	0	1	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0011	702	1	0	0	1	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0012	702	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0013	702	1	1	0	0	0	0	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATPSCKMT_chr5_10220507_10254888	0/0	c0014	702	1	0	0	0	0	1	copy fasta	ATPSCKMT	chr5	10220507	10254888
ATRAID_chr2_27207041_27222157	0/1	c0001	690	248	55	57	90	16	29	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	1/0	c0002	690	30	22	7	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	c0003	690	16	11	2	0	0	3	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	c0004	690	3	3	0	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	c0005	690	2	0	1	0	0	1	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	c0006	690	1	1	0	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	c0007	690	1	0	0	0	0	1	copy fasta	ATRAID	chr2	27207041	27222157
ATRAID_chr2_27207041_27222157	0/0	c0008	690	1	0	1	0	0	0	copy fasta	ATRAID	chr2	27207041	27222157
ATRIP_chr3_48441737_48472645	1/1	c0001	2376	322	52	57	160	16	35	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0002	2376	11	7	4	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0003	2376	7	5	2	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0004	2376	6	6	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0005	2376	4	4	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0006	2376	3	3	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0007	2376	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0008	2376	1	0	0	0	0	1	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0009	2376	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0010	2376	1	0	0	1	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0011	2376	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0012	2376	1	1	0	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRIP_chr3_48441737_48472645	0/0	c0013	2376	1	0	1	0	0	0	copy fasta	ATRIP	chr3	48441737	48472645
ATRNL1_chr10_115088365_115953999	0/1	c0001	4140	63	34	9	14	2	3	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0002	4140	23	5	8	7	2	1	copy fasta	ATRNL1	chr10	115088365	115953999