JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOHLH1_chr9_135688407_135704481	0/0	c0017	1164	1	0	0	1	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0018	1164	1	1	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0019	1164	1	0	0	1	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0020	1164	1	1	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH1_chr9_135688407_135704481	0/0	c0021	1164	1	1	0	0	0	0	copy fasta	SOHLH1	chr9	135688407	135704481
SOHLH2_chr13_36163217_36219556	1/1	c0001	1278	220	59	30	89	13	27	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0002	1278	150	14	25	97	4	10	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0003	1278	22	0	9	7	0	6	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0004	1278	15	11	2	0	0	2	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0005	1278	6	2	4	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0006	1278	1	1	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0007	1278	1	0	0	1	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0008	1278	1	0	0	1	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0009	1278	1	0	0	0	1	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0010	1278	1	0	0	1	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0011	1278	1	1	0	0	0	0	copy fasta	SOHLH2	chr13	36163217	36219556
SOHLH2_chr13_36163217_36219556	0/0	c0012	1278	1	0	0	0	0	1	copy fasta	SOHLH2	chr13	36163217	36219556
SON_chr21_33538038_33582481	0/0	c0001	7281	139	46	21	57	1	14	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0002	7281	56	0	10	34	3	9	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0003	7281	52	9	4	36	0	3	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/1	c0004	7281	30	5	6	7	4	7	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0005	7281	13	11	2	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0006	7281	7	0	7	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0007	7260	5	0	3	1	1	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0008	7260	5	0	3	1	0	1	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0009	7281	3	3	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0010	7281	3	3	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0011	7281	3	0	1	0	2	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0012	7281	2	0	0	2	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0013	7302	2	1	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0014	7281	2	0	0	2	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0015	7260	2	0	0	2	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0016	7281	2	2	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0017	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0018	7302	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0019	7281	1	0	0	0	0	1	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0020	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0021	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0022	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0023	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0024	7302	1	0	0	0	1	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0025	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0026	7260	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0027	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0028	7260	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0029	7248	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	1/0	c0030	7281	1	0	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0031	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0032	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0033	7260	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481