JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SON_chr21_33538038_33582481	0/0	c0034	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0035	7260	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0036	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0037	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0038	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0039	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0040	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0041	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0042	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0043	7260	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0044	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0045	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0046	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0047	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0048	7260	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0049	7281	1	0	0	0	0	1	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0050	7281	1	0	0	1	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0051	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0052	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0053	7281	1	1	0	0	0	0	copy fasta	SON	chr21	33538038	33582481
SON_chr21_33538038_33582481	0/0	c0054	7281	1	0	1	0	0	0	copy fasta	SON	chr21	33538038	33582481
SORBS1_chr10_95306773_95566371	0/0	c0001	3879	88	4	10	64	3	7	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/1	c0002	3879	59	10	8	30	2	8	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0003	3879	43	12	10	10	4	7	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0004	3879	20	8	4	1	0	7	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0005	3879	12	0	0	9	0	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0006	3879	10	10	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0007	3879	9	9	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0008	3879	5	1	3	0	0	1	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0009	3879	5	0	0	2	0	3	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0010	3879	5	3	1	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0011	3879	3	3	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0012	3879	3	0	0	3	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0013	3879	3	1	0	0	0	2	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0014	3879	2	0	1	0	1	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0015	3879	2	1	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0016	3879	2	0	0	0	0	2	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0017	3879	2	0	0	0	0	2	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0018	3879	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0019	3879	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0020	3879	2	1	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0021	3879	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0022	3879	2	2	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0023	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0024	3879	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0025	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0026	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0027	3879	1	0	0	0	0	1	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0028	3879	1	0	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0029	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371