JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SORBS1_chr10_95306773_95566371	0/0	c0030	3879	1	0	0	0	0	1	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0031	3879	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0032	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0033	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0034	3879	1	1	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0035	3879	1	0	1	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0036	3879	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0037	3879	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	0/0	c0038	3879	1	0	0	1	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS1_chr10_95306773_95566371	1/0	c0039	3879	1	0	0	0	0	0	copy fasta	SORBS1	chr10	95306773	95566371
SORBS2_chr4_185580523_185817194	1/0	c0001	3903	224	31	58	93	11	30	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0002	3903	10	7	2	0	1	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/1	c0003	3903	6	0	3	0	1	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0004	3903	5	4	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0005	3903	5	5	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0006	3903	4	4	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0007	3903	4	3	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0008	3903	4	4	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0009	3903	4	3	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0010	3903	3	3	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0011	3903	3	0	3	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0012	3903	3	2	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0013	3903	3	3	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0014	3903	3	3	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0015	3903	3	2	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0016	3903	2	2	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0017	3903	2	2	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0018	3903	2	0	0	2	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0019	3903	2	0	0	0	0	2	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0020	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0021	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0022	3903	1	0	0	0	0	1	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0023	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0024	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0025	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0026	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0027	3903	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0028	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0029	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0030	3903	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0031	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0032	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0033	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0034	3903	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0035	3903	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0036	3903	1	1	0	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0037	3903	1	0	0	0	1	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0038	3903	1	0	1	0	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS2_chr4_185580523_185817194	0/0	c0039	3903	1	0	0	1	0	0	copy fasta	SORBS2	chr4	185580523	185817194
SORBS3_chr8_22546927_22580788	0/0	c0001	2016	309	47	50	168	11	33	copy fasta	SORBS3	chr8	22546927	22580788