JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SORBS3_chr8_22546927_22580788	0/0	c0002	2016	43	7	13	7	5	11	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0003	2016	31	25	5	0	0	1	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0004	2016	4	4	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0005	2016	4	0	0	4	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0006	2016	4	0	0	4	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0007	2016	3	3	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0008	2016	3	0	0	3	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0009	2016	2	2	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0010	2016	2	0	2	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0011	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0012	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0013	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0014	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0015	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0016	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0017	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0018	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0019	2016	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0020	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0021	2016	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0022	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0023	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0024	2016	1	0	0	0	1	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0025	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0026	2016	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0027	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0028	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0029	2016	1	0	0	1	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0030	2016	1	0	0	0	1	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0031	2016	1	0	0	0	0	1	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0032	2016	1	1	0	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORBS3_chr8_22546927_22580788	0/0	c0033	2016	1	0	1	0	0	0	copy fasta	SORBS3	chr8	22546927	22580788
SORCS1_chr10_106568663_107169706	0/0	c0001	3507	42	16	7	15	0	4	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0002	3507	24	10	1	12	0	1	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0003	3507	19	9	3	6	0	1	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0004	3507	9	3	2	4	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0005	3507	5	2	2	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0006	3507	4	4	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0007	3507	2	2	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0008	3507	2	2	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0009	3507	2	2	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0010	3507	2	2	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0011	3507	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0012	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0013	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0014	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0015	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0016	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0017	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0018	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706