JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SORCS1_chr10_106568663_107169706	0/0	c0019	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0020	3507	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0021	3507	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0022	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0023	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0024	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0025	3507	1	1	0	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0026	3507	1	0	0	1	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0027	3507	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0028	3507	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS1_chr10_106568663_107169706	0/0	c0029	3507	1	0	1	0	0	0	copy fasta	SORCS1	chr10	106568663	107169706
SORCS2_chr4_7187538_7747827	0/0	c0001	3480	32	9	13	4	3	3	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0002	3480	26	4	7	8	1	6	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0003	3480	16	5	2	2	1	6	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0004	3480	14	0	6	5	0	3	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0005	3480	8	8	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0006	3480	6	0	5	0	1	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0007	3480	3	2	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0008	3480	3	3	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0009	3480	3	3	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0010	3480	3	3	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0011	3480	3	1	2	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0012	3480	2	2	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0013	3480	2	2	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0014	3480	2	2	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0015	3480	2	2	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0016	3480	2	1	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0017	3480	2	1	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0018	3483	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0019	3483	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0020	3483	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0021	3483	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0022	3483	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0023	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0024	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0025	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0026	3480	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0027	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0028	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0029	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0030	3480	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0031	3480	1	0	0	1	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0032	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0033	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0034	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0035	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0036	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0037	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0038	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0039	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827