JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SORCS2_chr4_7187538_7747827	0/0	c0040	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0041	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0042	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0043	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0044	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0045	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0046	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0047	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0048	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0049	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0050	3480	1	0	0	0	0	1	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0051	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0052	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0053	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0054	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0055	3480	1	1	0	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS2_chr4_7187538_7747827	0/0	c0056	3480	1	0	1	0	0	0	copy fasta	SORCS2	chr4	7187538	7747827
SORCS3_chr10_104636290_105270242	0/0	c0001	3669	61	14	23	12	5	7	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0002	3669	42	18	6	11	1	6	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0003	3669	4	4	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0004	3669	3	2	0	0	0	1	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0005	3669	3	2	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0006	3669	3	0	1	0	0	2	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0007	3669	2	2	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0008	3669	2	2	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0009	3669	2	0	2	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0010	3669	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0011	3669	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0012	3669	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0013	3669	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0014	3669	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0015	3669	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0016	3669	1	0	0	1	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0017	3669	1	1	0	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0018	3669	1	0	0	1	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0019	3669	1	0	0	1	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0020	3669	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORCS3_chr10_104636290_105270242	0/0	c0021	3669	1	0	1	0	0	0	copy fasta	SORCS3	chr10	104636290	105270242
SORD_chr15_45018195_45082185	0/1	c0001	1074	190	16	43	92	9	29	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0002	1074	63	47	12	3	1	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	1/0	c0003	1074	23	14	6	2	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0004	1074	12	1	0	11	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0005	1074	4	3	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0006	1074	4	4	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0007	1074	4	4	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0008	1074	3	1	1	0	0	1	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0009	1074	2	0	0	2	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0010	1074	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0011	1074	1	0	0	1	0	0	copy fasta	SORD	chr15	45018195	45082185
SORD_chr15_45018195_45082185	0/0	c0012	1074	1	1	0	0	0	0	copy fasta	SORD	chr15	45018195	45082185