JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SORL1_chr11_121447314_121638763	1/0	c0051	6645	1	0	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0052	6645	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0053	6645	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0054	6645	1	0	0	1	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0055	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0056	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0057	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0058	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0059	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0060	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0061	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0062	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0063	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0064	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0065	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0066	6645	1	0	1	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0067	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0068	6645	1	0	0	0	1	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0069	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0070	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0071	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORL1_chr11_121447314_121638763	0/0	c0072	6645	1	1	0	0	0	0	copy fasta	SORL1	chr11	121447314	121638763
SORT1_chr1_109304575_109402918	0/1	c0001	2496	134	22	40	42	6	23	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0002	2496	38	10	11	5	3	9	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0003	2496	32	32	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	1/0	c0004	2496	18	13	2	0	2	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0005	2496	4	4	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0006	2496	4	3	1	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0007	2496	3	0	0	0	0	3	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0008	2496	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0009	2496	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0010	2496	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0011	2496	1	0	0	0	1	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0012	2496	1	1	0	0	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0013	2496	1	0	0	1	0	0	copy fasta	SORT1	chr1	109304575	109402918
SORT1_chr1_109304575_109402918	0/0	c0014	2496	1	0	0	0	0	1	copy fasta	SORT1	chr1	109304575	109402918
SOS1_chr2_38976549_39126051	1/1	c0001	4002	216	66	27	89	4	28	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0002	4002	21	7	5	9	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0003	4002	3	0	3	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0004	4002	2	0	0	2	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0005	4002	1	0	1	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0006	4002	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0007	4002	1	1	0	0	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS1_chr2_38976549_39126051	0/0	c0008	4002	1	0	0	1	0	0	copy fasta	SOS1	chr2	38976549	39126051
SOS2_chr14_50112130_50236578	0/1	c0001	3999	182	31	43	80	8	19	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0002	3999	107	17	21	60	2	7	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	1/0	c0003	3999	63	20	5	18	3	16	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0004	3999	14	14	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0005	3999	3	0	2	0	1	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0006	3999	2	2	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578