JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOS2_chr14_50112130_50236578	0/0	c0007	3999	2	0	2	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0008	3999	1	0	0	0	0	1	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0009	3999	1	0	1	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0010	3999	1	0	0	0	0	1	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0011	3999	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0012	3999	1	0	0	1	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0013	3999	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0014	3999	1	0	0	1	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0015	3999	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOS2_chr14_50112130_50236578	0/0	c0016	3999	1	1	0	0	0	0	copy fasta	SOS2	chr14	50112130	50236578
SOSTDC1_chr7_16456481_16470738	1/1	c0001	621	413	90	68	191	14	48	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	c0002	621	4	0	0	4	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	c0003	621	3	3	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	c0004	621	1	1	0	0	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOSTDC1_chr7_16456481_16470738	0/0	c0005	621	1	0	0	1	0	0	copy fasta	SOSTDC1	chr7	16456481	16470738
SOST_chr17_43748738_43763791	1/1	c0001	642	419	93	80	182	14	48	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	c0002	642	2	0	2	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOST_chr17_43748738_43763791	0/0	c0003	642	1	1	0	0	0	0	copy fasta	SOST	chr17	43748738	43763791
SOWAHA_chr5_132808302_132821786	0/1	c0001	1650	267	38	43	150	6	29	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0002	1659	58	6	11	29	5	7	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0003	1650	36	32	4	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0004	1650	14	10	4	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0005	1650	5	0	5	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	1/0	c0006	1650	5	0	3	0	1	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0007	1650	4	3	1	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0008	1659	3	3	0	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0009	1650	2	2	0	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0010	1629	1	0	0	1	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0011	1659	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0012	1650	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0013	1650	1	0	0	1	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0014	1650	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0015	1650	1	1	0	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0016	1650	1	1	0	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0017	1650	1	0	0	1	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0018	1650	1	0	1	0	0	0	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHA_chr5_132808302_132821786	0/0	c0019	1650	1	0	0	0	0	1	copy fasta	SOWAHA	chr5	132808302	132821786
SOWAHB_chr4_76889152_76903144	1/1	c0001	2382	304	45	60	157	11	29	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0002	2382	43	4	1	34	3	1	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0003	2382	34	13	4	13	1	3	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0004	2382	17	5	4	0	0	8	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0005	2382	7	6	1	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0006	2382	6	6	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0007	2388	4	4	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0008	2382	4	4	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0009	2382	4	4	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0010	2382	3	3	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0011	2382	3	0	0	3	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0012	2371	1	0	0	1	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0013	2367	1	0	0	0	0	1	copy fasta	SOWAHB	chr4	76889152	76903144