JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOWAHB_chr4_76889152_76903144	0/0	c0014	2385	1	1	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0015	2410	1	0	0	1	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0016	2382	1	1	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0017	2382	1	1	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0018	2382	1	0	0	1	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0019	2371	1	0	0	0	1	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHB_chr4_76889152_76903144	0/0	c0020	2382	1	1	0	0	0	0	copy fasta	SOWAHB	chr4	76889152	76903144
SOWAHC_chr2_109609364_109623990	0/1	c0001	1578	265	55	43	124	13	29	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0002	1578	144	23	31	71	1	18	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0003	1578	7	6	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0004	1578	5	5	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0005	1578	4	3	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	1/0	c0007	1578	1	0	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0008	1578	1	0	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0009	1578	1	1	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0010	1578	1	1	0	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0011	1578	1	0	1	0	0	0	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHC_chr2_109609364_109623990	0/0	c0012	1560	1	0	0	0	0	1	copy fasta	SOWAHC	chr2	109609364	109623990
SOWAHD_chrX_119753588_119765202	0/1	c0001	948	172	48	34	55	9	25	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	1/0	c0002	948	112	10	20	69	4	8	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0003	948	17	6	1	10	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0004	948	10	8	2	0	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0005	948	6	6	0	0	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0006	948	1	0	0	1	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0007	948	1	0	0	1	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0008	949	1	0	0	1	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0009	948	1	0	0	0	0	1	copy fasta	SOWAHD	chrX	119753588	119765202
SOWAHD_chrX_119753588_119765202	0/0	c0010	949	1	0	0	1	0	0	copy fasta	SOWAHD	chrX	119753588	119765202
SOX10_chr22_37967312_37989555	0/1	c0001	1401	202	59	33	82	6	21	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	1/0	c0002	1401	71	2	21	30	4	13	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0003	1401	36	11	4	16	0	5	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0004	1401	18	18	0	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0005	1401	3	0	0	3	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0006	1401	2	0	0	2	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0007	1401	1	0	1	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0008	1401	1	0	0	0	0	1	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0009	1401	1	0	1	0	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX10_chr22_37967312_37989555	0/0	c0010	1401	1	0	0	1	0	0	copy fasta	SOX10	chr22	37967312	37989555
SOX11_chr2_5687384_5706385	1/1	c0001	1326	430	94	81	185	18	50	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	c0002	1326	1	0	1	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	c0003	1326	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	c0004	1326	1	1	0	0	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX11_chr2_5687384_5706385	0/0	c0005	1326	1	0	0	1	0	0	copy fasta	SOX11	chr2	5687384	5706385
SOX12_chr20_320552_335224	1/1	c0001	948	388	87	65	176	16	42	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	c0002	948	3	0	3	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	c0003	948	3	3	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	c0004	948	2	0	0	0	0	2	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	c0005	948	2	2	0	0	0	0	copy fasta	SOX12	chr20	320552	335224
SOX12_chr20_320552_335224	0/0	c0006	935	1	0	0	1	0	0	copy fasta	SOX12	chr20	320552	335224