JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATRNL1_chr10_115088365_115953999	0/0	c0003	4140	14	10	4	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	1/0	c0004	4140	7	6	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0005	4140	6	5	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0006	4140	3	2	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0007	4140	2	2	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0008	4140	2	1	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0009	4140	1	0	0	0	0	1	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0010	4140	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0011	4140	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0012	4140	1	0	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0013	4140	1	0	0	0	0	1	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0014	4140	1	0	1	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0015	4140	1	1	0	0	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRNL1_chr10_115088365_115953999	0/0	c0016	4140	1	0	0	1	0	0	copy fasta	ATRNL1	chr10	115088365	115953999
ATRN_chr20_3466018_3656118	0/0	c0001	4290	86	18	20	33	2	13	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/1	c0002	4290	53	23	15	5	4	5	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0003	4290	13	9	3	0	1	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0004	4290	10	8	0	0	0	2	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0005	4290	7	0	4	0	3	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0006	4290	5	5	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0007	4290	5	0	2	3	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0008	4290	3	0	3	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0009	4290	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0010	4290	3	0	1	0	2	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0011	4290	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0012	4290	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0013	4290	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0014	4290	3	3	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0015	4290	2	1	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0016	4290	2	2	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0017	4290	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0018	4290	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0019	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0020	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0021	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0022	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0023	4290	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0024	4290	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	1/0	c0025	4290	1	0	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0026	4290	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0027	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0028	4290	1	0	1	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0029	4290	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0030	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0031	4290	1	1	0	0	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRN_chr20_3466018_3656118	0/0	c0032	4290	1	0	0	1	0	0	copy fasta	ATRN	chr20	3466018	3656118
ATRX_chrX_77499880_77791216	1/0	c0001	7479	122	36	12	58	4	11	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/1	c0002	7479	67	2	10	34	7	13	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0003	7479	11	10	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0004	7479	5	0	5	0	0	0	copy fasta	ATRX	chrX	77499880	77791216