JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOX3_chrX_140497985_140510069	0/0	c0007	1342	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0008	1320	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0009	1341	1	0	0	0	0	1	copy fasta	SOX3	chrX	140497985	140510069
SOX3_chrX_140497985_140510069	0/0	c0010	1342	1	0	0	1	0	0	copy fasta	SOX3	chrX	140497985	140510069
SOX4_chr6_21588751_21603619	1/1	c0001	1425	337	82	58	147	11	37	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0002	1428	5	4	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0003	1425	2	0	1	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0004	1425	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0005	1428	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0006	1425	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0007	1425	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0008	1425	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0009	1425	1	0	0	0	0	1	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0010	1425	1	0	0	0	1	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0012	1425	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0013	1425	1	0	1	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0014	1425	1	0	0	1	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX4_chr6_21588751_21603619	0/0	c0015	1425	1	1	0	0	0	0	copy fasta	SOX4	chr6	21588751	21603619
SOX5_chr12_23524504_23954670	1/1	c0001	2292	192	73	46	37	6	28	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	c0002	2292	15	2	2	9	0	2	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	c0003	2292	2	2	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	c0004	2292	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	c0005	2292	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX5_chr12_23524504_23954670	0/0	c0006	2292	1	1	0	0	0	0	copy fasta	SOX5	chr12	23524504	23954670
SOX6_chr11_15961449_16361546	0/0	c0001	2487	130	35	29	57	1	8	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	1/1	c0002	2487	79	23	13	30	1	10	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	c0003	2487	5	0	0	5	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	c0004	2487	2	0	0	2	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	c0005	2487	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX6_chr11_15961449_16361546	0/0	c0006	2487	1	0	0	1	0	0	copy fasta	SOX6	chr11	15961449	16361546
SOX7_chr8_10718768_10735511	1/0	c0001	1167	242	19	40	140	11	31	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/1	c0002	1167	156	77	29	24	7	18	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0003	1167	25	0	3	22	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0004	1167	8	0	2	6	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0005	1167	8	0	5	3	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0006	1167	3	0	0	3	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0007	1167	3	0	0	3	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0008	1167	2	0	1	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0009	1167	2	0	2	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0010	1167	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0011	1167	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0012	1167	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0013	1167	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0014	1167	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0015	1167	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0016	1167	1	0	1	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0017	1167	1	0	1	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0018	1167	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0019	1167	1	0	0	0	0	1	copy fasta	SOX7	chr8	10718768	10735511