JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SOX7_chr8_10718768_10735511	0/0	c0020	1167	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0021	1167	1	1	0	0	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX7_chr8_10718768_10735511	0/0	c0022	1167	1	0	0	1	0	0	copy fasta	SOX7	chr8	10718768	10735511
SOX8_chr16_976770_991979	1/0	c0001	1341	187	27	36	103	5	15	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0002	1341	112	43	26	21	9	13	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/1	c0003	1341	95	17	14	48	1	14	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0004	1341	4	0	2	0	0	2	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0005	1341	3	3	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0006	1342	3	0	0	3	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0007	1342	3	0	0	3	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0008	1341	3	0	0	3	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0009	1341	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0010	1342	2	1	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0011	1341	2	2	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0012	1342	2	0	1	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0013	1342	2	0	1	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0014	1341	2	0	2	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0015	1341	1	0	0	0	1	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0016	1341	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0017	1341	1	0	0	0	0	1	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0018	1343	1	0	1	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0019	1341	1	0	1	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0020	1341	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0021	1343	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0022	1343	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0023	1341	1	1	0	0	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0024	1341	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0025	1341	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX8_chr16_976770_991979	0/0	c0026	1341	1	0	0	1	0	0	copy fasta	SOX8	chr16	976770	991979
SOX9_chr17_72116020_72131416	1/1	c0001	1530	341	84	53	160	10	32	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0002	1530	29	5	10	3	4	7	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0003	1531	8	1	1	5	0	1	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0004	1530	8	0	8	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0005	1530	2	0	0	2	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0006	1530	2	2	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0007	1509	2	0	2	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0008	1531	2	0	1	0	0	1	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0009	1530	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0010	1530	1	0	1	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0011	1512	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0012	1530	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0013	1530	1	0	0	1	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0014	1530	1	0	0	0	0	1	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0015	1531	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SOX9_chr17_72116020_72131416	0/0	c0016	1530	1	1	0	0	0	0	copy fasta	SOX9	chr17	72116020	72131416
SP100_chr2_230411201_230550606	0/0	c0001	2658	94	31	18	26	4	15	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	1/1	c0002	2658	55	13	10	25	1	4	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0003	2658	44	19	11	13	0	1	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0004	2658	37	5	16	3	7	6	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0005	2658	29	9	3	17	0	0	copy fasta	SP100	chr2	230411201	230550606