JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SP100_chr2_230411201_230550606	0/0	c0006	2658	6	0	0	0	2	4	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0007	2658	4	4	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0008	2658	4	3	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0009	2658	3	0	3	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0010	2658	2	0	0	0	0	2	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0011	2658	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0012	2658	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0013	2658	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0014	2658	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0015	2658	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0016	2658	1	0	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0017	2658	1	0	1	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0018	2658	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0019	2658	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0020	2658	1	1	0	0	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0021	2658	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP100_chr2_230411201_230550606	0/0	c0022	2658	1	0	0	1	0	0	copy fasta	SP100	chr2	230411201	230550606
SP110_chr2_230160186_230224984	0/1	c0001	2142	155	33	17	86	5	13	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0002	2142	47	3	15	23	3	3	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0003	2142	36	1	8	12	4	11	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0004	2142	21	0	2	18	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0005	2142	16	1	2	8	1	4	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0006	2142	15	0	0	15	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0007	2142	15	13	1	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0008	2142	9	9	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0009	2142	8	1	1	2	1	3	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0010	2142	7	1	0	6	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0011	2142	7	6	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0012	2142	6	6	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0013	2142	6	2	3	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0014	2142	6	1	4	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0015	2142	5	5	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0016	2142	5	0	2	0	1	2	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0017	2142	4	0	3	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0018	2142	4	0	3	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0019	2142	3	0	2	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0020	2142	3	0	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0021	2142	3	1	1	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0022	2142	3	0	0	3	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0023	2142	3	3	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0024	2142	3	1	1	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0025	2142	2	0	0	2	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0026	2142	2	1	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0027	2142	2	0	0	2	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0028	2142	2	0	0	2	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0029	2142	2	2	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0030	2142	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0031	2142	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0032	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0033	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984