JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SP110_chr2_230160186_230224984	0/0	c0034	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0035	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0036	2142	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0037	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0038	2142	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0039	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0040	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0041	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0042	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0043	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0044	2142	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0045	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0046	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0047	2142	1	1	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0048	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0049	2142	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0050	2142	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0051	2142	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0052	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0053	2142	1	0	1	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0054	2142	1	0	0	0	0	1	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0055	2142	1	0	0	1	0	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	0/0	c0056	2142	1	0	0	0	1	0	copy fasta	SP110	chr2	230160186	230224984
SP110_chr2_230160186_230224984	1/0	c0057	2142	1	0	0	0	0	0	copy fasta	SP110	chr2	230160186	230224984
SP140L_chr2_230322193_230408732	1/1	c0001	1743	108	15	14	63	5	9	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0002	1743	58	24	17	11	5	1	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0003	1743	54	10	6	25	2	11	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0004	1743	48	13	13	10	2	10	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0005	1743	17	2	3	9	2	1	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0006	1743	8	7	1	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0007	1743	6	0	1	4	0	1	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0008	1743	5	0	0	4	1	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0009	1743	5	0	4	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0010	1743	4	4	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0011	1743	3	3	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0012	1743	3	3	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0013	1743	2	2	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0014	1743	2	0	0	0	0	2	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0015	1743	2	0	0	0	0	2	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0016	1743	1	0	0	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0017	1743	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0018	1743	1	0	0	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0019	1743	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0020	1743	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0021	1743	1	0	0	0	0	1	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0022	1743	1	0	1	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0023	1743	1	0	0	1	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0024	1743	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0025	1743	1	1	0	0	0	0	copy fasta	SP140L	chr2	230322193	230408732
SP140L_chr2_230322193_230408732	0/0	c0026	1743	1	0	0	0	1	0	copy fasta	SP140L	chr2	230322193	230408732