JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SP9_chr2_174329954_174343500	1/0	c0001	1455	175	69	20	47	11	27	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0002	1455	133	11	21	88	2	11	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0003	1455	51	10	24	7	2	8	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0004	1440	19	0	1	18	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/1	c0005	1455	7	1	3	0	1	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0006	1458	4	4	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0007	1455	2	0	1	0	0	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0008	1455	2	0	1	0	0	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0009	1455	2	0	2	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0010	1458	2	2	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0011	1455	1	0	1	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0012	1455	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0013	1455	1	1	0	0	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0014	1455	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0015	1440	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0016	1470	1	0	0	0	0	1	copy fasta	SP9	chr2	174329954	174343500
SP9_chr2_174329954_174343500	0/0	c0017	1455	1	0	0	1	0	0	copy fasta	SP9	chr2	174329954	174343500
SPA17_chr11_124668904_124702518	1/1	c0001	456	353	85	60	152	14	40	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	c0002	456	2	0	0	0	0	2	copy fasta	SPA17	chr11	124668904	124702518
SPA17_chr11_124668904_124702518	0/0	c0003	456	1	1	0	0	0	0	copy fasta	SPA17	chr11	124668904	124702518
SPAAR_chr9_35904490_35916686	1/1	c0001	228	416	91	80	193	16	34	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	c0002	228	2	0	0	2	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPAAR_chr9_35904490_35916686	0/0	c0003	228	2	1	0	1	0	0	copy fasta	SPAAR	chr9	35904490	35916686
SPACA1_chr6_88042841_88071838	1/1	c0001	885	315	75	60	128	16	34	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	c0002	885	10	10	0	0	0	0	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	c0003	885	2	0	0	2	0	0	copy fasta	SPACA1	chr6	88042841	88071838
SPACA1_chr6_88042841_88071838	0/0	c0004	885	1	1	0	0	0	0	copy fasta	SPACA1	chr6	88042841	88071838
SPACA3_chr17_32986847_33002877	1/1	c0001	648	441	76	83	220	16	44	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0002	648	10	3	0	1	0	6	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0003	648	7	6	1	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0004	648	7	7	0	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0005	648	2	0	2	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0006	648	1	1	0	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0007	648	1	0	0	1	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA3_chr17_32986847_33002877	0/0	c0008	648	1	1	0	0	0	0	copy fasta	SPACA3	chr17	32986847	33002877
SPACA4_chr19_48601742_48612714	0/0	c0001	375	387	88	79	158	14	48	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	c0002	375	3	3	0	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	c0003	375	1	0	1	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA4_chr19_48601742_48612714	0/0	c0004	375	1	1	0	0	0	0	copy fasta	SPACA4	chr19	48601742	48612714
SPACA5B_chrX_48125626_48137620	0/0	c0001	480	310	72	52	144	8	34	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5B_chrX_48125626_48137620	0/0	c0002	479	1	0	0	1	0	0	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5B_chrX_48125626_48137620	0/0	c0003	480	1	0	0	1	0	0	copy fasta	SPACA5B	chrX	48125626	48137620
SPACA5_chrX_48001988_48014733	0/0	c0001	480	290	76	51	118	11	34	copy fasta	SPACA5	chrX	48001988	48014733
SPACA5_chrX_48001988_48014733	0/0	c0002	481	2	0	1	1	0	0	copy fasta	SPACA5	chrX	48001988	48014733
SPACA6_chr19_51688330_51710190	1/1	c0001	975	344	69	69	162	10	32	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0002	975	42	9	7	12	4	10	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0003	975	11	6	0	2	2	1	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0004	975	10	5	2	2	0	1	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0005	975	2	1	1	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0006	975	1	0	1	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190