JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPACA6_chr19_51688330_51710190	0/0	c0007	975	1	1	0	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0008	975	1	1	0	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0009	975	1	1	0	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0010	975	1	1	0	0	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0011	975	1	0	0	1	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA6_chr19_51688330_51710190	0/0	c0012	975	1	0	0	1	0	0	copy fasta	SPACA6	chr19	51688330	51710190
SPACA7_chr13_112371355_112439689	0/0	c0001	588	258	66	39	120	7	26	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/1	c0002	588	121	18	26	60	6	10	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	c0003	588	5	5	0	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	c0004	588	3	1	2	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	c0005	588	1	0	1	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	c0006	588	1	1	0	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	c0007	588	1	0	0	0	1	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA7_chr13_112371355_112439689	0/0	c0008	588	1	1	0	0	0	0	copy fasta	SPACA7	chr13	112371355	112439689
SPACA9_chr9_132873898_132895030	1/1	c0001	669	326	70	74	133	12	35	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0002	669	86	19	4	52	4	7	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0003	669	7	7	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0004	669	5	0	0	5	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0005	669	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0006	669	1	1	0	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0007	669	1	0	1	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0008	669	1	0	0	1	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0009	669	1	0	1	0	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACA9_chr9_132873898_132895030	0/0	c0010	525	1	0	0	1	0	0	copy fasta	SPACA9	chr9	132873898	132895030
SPACDR_chr7_100451620_100469260	1/1	c0001	621	350	94	54	148	14	38	copy fasta	SPACDR	chr7	100451620	100469260
SPADH_chr10_122667850_122684494	1/1	c0001	414	342	84	62	151	10	33	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0002	414	38	0	5	31	0	2	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0003	414	17	2	8	0	1	6	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0004	414	5	1	3	0	1	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0005	414	4	4	0	0	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0006	414	4	0	0	4	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0007	414	2	2	0	0	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0008	414	1	1	0	0	0	0	copy fasta	SPADH	chr10	122667850	122684494
SPADH_chr10_122667850_122684494	0/0	c0009	414	1	0	0	0	0	1	copy fasta	SPADH	chr10	122667850	122684494
SPAG11A_chr8_7843008_7865943	0/0	c0001	402	55	16	5	26	4	4	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0002	402	41	2	12	23	2	2	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0003	402	13	0	5	6	1	1	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0004	402	7	1	4	1	1	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	1/0	c0005	402	7	6	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0006	402	2	2	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0007	402	1	1	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0008	402	1	0	0	0	1	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0009	402	1	0	0	0	1	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0010	402	1	1	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0011	402	1	0	0	0	0	1	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11A_chr8_7843008_7865943	0/0	c0012	402	1	1	0	0	0	0	copy fasta	SPAG11A	chr8	7843008	7865943
SPAG11B_chr8_7445603_7468542	0/0	c0001	402	95	12	16	52	6	9	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/1	c0002	402	82	17	11	39	2	12	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0003	402	13	2	3	8	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0004	402	5	0	2	2	0	1	copy fasta	SPAG11B	chr8	7445603	7468542