JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATRX_chrX_77499880_77791216	0/0	c0005	7479	3	3	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0006	7479	2	0	1	0	0	1	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0007	7479	1	1	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0008	7479	1	1	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0009	7476	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0010	7479	1	1	0	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0011	7479	1	0	0	1	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0012	7479	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0013	7479	1	0	0	0	0	1	copy fasta	ATRX	chrX	77499880	77791216
ATRX_chrX_77499880_77791216	0/0	c0014	7479	1	0	1	0	0	0	copy fasta	ATRX	chrX	77499880	77791216
ATR_chr3_142444235_142583733	0/0	c0001	7935	114	24	20	55	6	9	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/1	c0002	7935	74	4	12	50	3	4	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0003	7935	39	5	10	19	1	4	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0004	7935	26	20	3	1	0	2	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	1/0	c0005	7935	19	1	6	11	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0006	7935	16	13	3	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0007	7935	11	0	4	0	2	5	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0008	7935	6	5	1	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0009	7935	3	3	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0010	7935	2	0	0	2	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0011	7935	2	2	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0012	7935	1	0	0	0	1	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0013	7935	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0014	7935	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0015	7935	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0016	7935	1	0	1	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0017	7935	1	0	0	0	1	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0018	7935	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0019	7935	1	0	0	1	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0020	7935	1	0	0	1	0	0	copy fasta	ATR	chr3	142444235	142583733
ATR_chr3_142444235_142583733	0/0	c0021	7935	1	1	0	0	0	0	copy fasta	ATR	chr3	142444235	142583733
ATXN10_chr22_45666834_45850307	1/1	c0001	1428	314	83	44	141	10	34	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	c0002	1428	1	1	0	0	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN10_chr22_45666834_45850307	0/0	c0003	1428	1	0	0	1	0	0	copy fasta	ATXN10	chr22	45666834	45850307
ATXN1L_chr16_71840976_71862328	1/1	c0001	2070	296	62	62	131	9	30	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0002	2070	91	0	21	54	3	13	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0003	2070	11	11	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0004	2070	8	7	1	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0005	2070	3	0	0	0	0	3	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0006	2070	2	2	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0007	2070	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0008	2070	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0009	2070	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0010	2070	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0011	2070	1	0	0	0	0	1	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0012	2070	1	1	0	0	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1L_chr16_71840976_71862328	0/0	c0013	2070	1	0	0	1	0	0	copy fasta	ATXN1L	chr16	71840976	71862328
ATXN1_chr6_16294112_16766460	0/0	c0001	2451	21	4	5	9	1	2	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0002	2445	17	4	2	10	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	1/0	c0003	2448	14	2	7	0	1	3	copy fasta	ATXN1	chr6	16294112	16766460