JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPAG11B_chr8_7445603_7468542	0/0	c0005	402	2	0	0	2	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0006	402	2	1	0	1	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0007	402	2	0	0	2	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0008	402	2	2	0	0	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0009	402	1	0	1	0	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG11B_chr8_7445603_7468542	0/0	c0010	402	1	0	1	0	0	0	copy fasta	SPAG11B	chr8	7445603	7468542
SPAG16_chr2_213279464_214415501	0/0	c0001	1896	34	23	3	4	0	4	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0002	1896	20	9	4	6	1	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0003	1896	18	4	3	8	1	2	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0004	1896	4	4	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0005	1896	3	3	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0006	1896	2	2	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0007	1896	1	0	0	1	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0008	1896	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0009	1896	1	0	0	1	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0010	1896	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG16_chr2_213279464_214415501	0/0	c0011	1896	1	1	0	0	0	0	copy fasta	SPAG16	chr2	213279464	214415501
SPAG17_chr1_117948590_118190228	0/0	c0001	6672	57	2	18	25	2	10	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0002	6672	46	0	4	34	0	8	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/1	c0003	6672	32	5	9	7	5	5	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0004	6672	26	24	2	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0005	6672	23	3	2	16	1	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	1/0	c0006	6672	21	8	2	4	3	3	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0007	6672	4	0	3	0	1	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0008	6672	3	0	0	3	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0009	6672	3	3	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0010	6672	3	0	0	3	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0011	6672	3	0	1	0	0	2	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0012	6672	3	0	0	3	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0013	6672	3	0	3	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0014	6672	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0015	6672	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0016	6672	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0017	6672	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0018	6672	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0019	6672	2	2	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0020	6672	2	0	0	2	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0021	6672	2	0	0	2	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0022	6672	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0023	6672	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0024	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0025	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0026	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0027	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0028	6672	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0029	6672	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0030	6672	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0031	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0032	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0033	6672	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228