JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPAG17_chr1_117948590_118190228	0/0	c0034	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0035	6672	1	0	1	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0036	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0037	6672	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0038	6672	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0039	6672	1	1	0	0	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0040	6672	1	0	0	0	0	1	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0041	6672	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0042	6672	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0043	6672	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG17_chr1_117948590_118190228	0/0	c0044	6672	1	0	0	1	0	0	copy fasta	SPAG17	chr1	117948590	118190228
SPAG1_chr8_100153587_100246904	1/0	c0001	2781	93	17	14	51	1	9	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/1	c0002	2781	91	1	22	52	4	11	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0003	2781	37	30	7	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0004	2784	35	5	15	0	7	8	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0005	2781	22	0	2	16	0	4	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0006	2784	20	0	1	19	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0007	2781	15	10	1	0	0	4	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0008	2781	14	14	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0009	2781	11	1	4	2	1	3	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0010	2781	6	0	0	6	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0011	2781	3	3	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0012	2781	2	1	0	0	1	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0013	2781	2	0	2	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0014	2781	2	2	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0015	2781	2	0	0	2	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0016	2781	2	0	0	2	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0017	2784	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0018	2784	1	0	0	0	0	1	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0019	2784	1	0	0	1	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0020	2781	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0021	2781	1	0	0	1	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0022	2781	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0023	2781	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0024	2781	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG1_chr8_100153587_100246904	0/0	c0025	2781	1	1	0	0	0	0	copy fasta	SPAG1	chr8	100153587	100246904
SPAG4_chr20_35610829_35626094	1/1	c0001	1314	298	68	53	118	16	41	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0002	1314	10	10	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0003	1314	3	3	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0004	1314	2	2	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0005	1314	2	0	2	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0006	1314	2	0	1	0	0	1	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0007	1314	1	1	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0008	1314	1	1	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG4_chr20_35610829_35626094	0/0	c0009	1314	1	1	0	0	0	0	copy fasta	SPAG4	chr20	35610829	35626094
SPAG5_chr17_28572574_28604025	1/1	c0001	3582	309	80	57	133	6	31	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0002	3582	3	0	0	3	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0003	3582	2	0	2	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0004	3582	2	2	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0005	3582	2	0	0	2	0	0	copy fasta	SPAG5	chr17	28572574	28604025