JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPAG5_chr17_28572574_28604025	0/0	c0006	3582	2	0	0	0	0	2	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0007	3582	1	0	1	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0008	3582	1	0	0	0	1	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0009	3582	1	0	0	0	1	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0010	3582	1	0	0	1	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0011	3582	1	1	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0012	3582	1	1	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0013	3582	1	0	0	0	0	1	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0014	3582	1	1	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0015	3582	1	1	0	0	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG5_chr17_28572574_28604025	0/0	c0016	3582	1	0	0	1	0	0	copy fasta	SPAG5	chr17	28572574	28604025
SPAG6_chr10_22340496_22422610	1/1	c0001	1530	80	29	22	14	6	7	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	c0002	1530	61	49	10	0	0	2	copy fasta	SPAG6	chr10	22340496	22422610
SPAG6_chr10_22340496_22422610	0/0	c0003	1530	1	0	0	0	0	1	copy fasta	SPAG6	chr10	22340496	22422610
SPAG7_chr17_4954226_4972817	1/1	c0001	684	405	76	69	205	16	37	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0002	684	10	10	0	0	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0003	684	3	1	1	0	0	1	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0004	684	2	0	0	0	0	2	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0005	684	1	0	0	1	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0006	684	1	0	0	1	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0007	684	1	0	0	1	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG7_chr17_4954226_4972817	0/0	c0008	684	1	1	0	0	0	0	copy fasta	SPAG7	chr17	4954226	4972817
SPAG8_chr9_35804795_35817262	1/1	c0001	1458	245	38	47	119	10	29	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0002	1446	113	23	23	57	2	8	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0003	1454	14	0	0	14	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0004	1458	10	9	0	0	0	1	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0005	1446	9	0	0	9	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0006	1446	8	7	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0007	1446	7	6	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0008	1446	5	5	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0009	1458	2	0	2	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0010	1446	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0011	1446	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0012	1446	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0013	1458	1	0	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0014	1458	1	0	0	1	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0015	1446	1	1	0	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG8_chr9_35804795_35817262	0/0	c0016	1446	1	0	1	0	0	0	copy fasta	SPAG8	chr9	35804795	35817262
SPAG9_chr17_50957174_51125868	1/1	c0001	3966	229	46	54	87	14	26	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0002	3966	21	16	5	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0003	3966	18	18	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0004	3966	10	6	2	0	0	2	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0005	3966	8	1	3	4	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0006	3966	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0007	3966	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0008	3966	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0009	3966	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0010	3966	1	1	0	0	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAG9_chr17_50957174_51125868	0/0	c0011	3966	1	0	0	1	0	0	copy fasta	SPAG9	chr17	50957174	51125868
SPAM1_chr7_123920241_123965046	1/1	c0001	1530	276	79	38	115	6	36	copy fasta	SPAM1	chr7	123920241	123965046