JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPANXC_chrX_141236463_141247517	0/0	c0001	294	173	13	33	106	5	16	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0002	294	63	23	10	18	4	8	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0003	294	32	1	3	24	2	2	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0004	294	17	14	1	0	0	2	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0005	294	14	0	3	11	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0006	294	9	8	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0007	294	9	9	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0008	294	5	0	1	4	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0009	294	3	1	2	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0010	294	3	0	2	1	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0011	294	2	0	0	2	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0012	294	2	2	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0013	294	2	2	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0014	294	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0015	294	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0016	312	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0017	294	1	0	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0018	294	1	0	0	0	0	1	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0019	294	1	0	1	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0020	294	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0021	294	1	0	0	0	0	1	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0022	312	1	1	0	0	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXC_chrX_141236463_141247517	0/0	c0023	312	1	0	0	1	0	0	copy fasta	SPANXC	chrX	141236463	141247517
SPANXD_chrX_141692411_141703739	0/0	c0001	294	280	48	54	141	11	26	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0002	294	10	5	2	3	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0003	294	8	6	2	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0004	294	7	4	1	2	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0005	294	6	6	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0006	294	5	1	2	0	0	2	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0007	294	5	4	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0008	294	4	4	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0009	294	2	2	0	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0010	294	2	0	0	0	0	2	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0011	294	1	0	1	0	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0012	294	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0013	294	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0014	294	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXD_chrX_141692411_141703739	0/0	c0015	299	1	0	0	1	0	0	copy fasta	SPANXD	chrX	141692411	141703739
SPANXN1_chrX_145242503_145261208	1/1	c0001	219	269	38	62	126	13	28	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	c0002	219	39	14	2	17	0	6	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	c0003	219	21	19	2	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	c0004	219	3	3	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	c0005	219	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN1_chrX_145242503_145261208	0/0	c0006	219	1	1	0	0	0	0	copy fasta	SPANXN1	chrX	145242503	145261208
SPANXN2_chrX_143706955_143725752	0/1	c0001	543	163	21	24	94	7	16	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0002	543	89	25	20	27	3	14	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0003	543	46	4	7	31	0	4	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	1/0	c0004	543	20	18	1	0	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0005	543	12	9	3	0	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0006	543	1	1	0	0	0	0	copy fasta	SPANXN2	chrX	143706955	143725752