JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPANXN2_chrX_143706955_143725752	0/0	c0007	542	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0008	543	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0009	504	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0010	543	1	0	0	1	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN2_chrX_143706955_143725752	0/0	c0011	542	1	0	1	0	0	0	copy fasta	SPANXN2	chrX	143706955	143725752
SPANXN3_chrX_143503735_143522475	0/1	c0001	426	285	45	57	145	12	25	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	1/0	c0002	426	51	20	7	15	1	7	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	c0003	426	8	7	1	0	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	c0004	426	4	4	0	0	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN3_chrX_143503735_143522475	0/0	c0005	427	1	0	0	1	0	0	copy fasta	SPANXN3	chrX	143503735	143522475
SPANXN4_chrX_143020928_143039311	1/1	c0001	300	320	67	55	155	9	32	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	c0002	300	13	11	2	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	c0003	299	6	0	2	0	4	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	c0004	300	1	0	1	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	c0005	300	1	1	0	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	c0006	300	1	0	0	1	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN4_chrX_143020928_143039311	0/0	c0007	299	1	1	0	0	0	0	copy fasta	SPANXN4	chrX	143020928	143039311
SPANXN5_chrX_52791144_52802427	1/1	c0001	219	297	79	40	140	11	25	copy fasta	SPANXN5	chrX	52791144	52802427
SPANXN5_chrX_52791144_52802427	0/0	c0002	219	6	1	4	0	0	1	copy fasta	SPANXN5	chrX	52791144	52802427
SPARCL1_chr4_87468335_87534376	0/0	c0001	1995	118	35	16	49	4	14	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	1/0	c0002	1995	90	7	11	54	7	10	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/1	c0003	1995	82	5	16	48	5	7	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0004	1995	64	31	11	18	2	2	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0005	1995	13	13	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0006	1995	4	0	0	4	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0007	1995	4	0	0	4	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0008	1995	4	0	4	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0009	1995	3	3	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0010	1995	1	0	0	0	0	1	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0011	1995	1	1	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0012	1995	1	1	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0013	1995	1	0	0	1	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0014	1995	1	0	0	1	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0015	1995	1	1	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0016	1995	1	1	0	0	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARCL1_chr4_87468335_87534376	0/0	c0017	1995	1	0	0	1	0	0	copy fasta	SPARCL1	chr4	87468335	87534376
SPARC_chr5_151656096_151691915	1/1	c0001	912	326	38	62	174	12	38	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0002	912	95	46	15	24	4	6	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0003	912	10	8	2	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0004	912	3	0	1	0	0	2	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0005	912	2	0	0	0	0	2	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0006	912	2	0	0	2	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0007	912	1	0	0	1	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0008	912	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0009	912	1	0	0	1	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPARC_chr5_151656096_151691915	0/0	c0010	912	1	1	0	0	0	0	copy fasta	SPARC	chr5	151656096	151691915
SPART_chr13_36296638_36351394	1/1	c0001	2001	258	77	48	90	10	31	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0002	2001	111	6	25	66	4	10	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0003	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0004	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394