JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPART_chr13_36296638_36351394	0/0	c0005	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0006	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0007	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0008	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0009	2001	1	1	0	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0010	2001	1	0	0	0	0	1	copy fasta	SPART	chr13	36296638	36351394
SPART_chr13_36296638_36351394	0/0	c0011	2001	1	0	1	0	0	0	copy fasta	SPART	chr13	36296638	36351394
SPAST_chr2_32058556_32162637	1/1	c0001	1851	339	85	70	140	12	30	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	c0002	1851	2	0	0	2	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPAST_chr2_32058556_32162637	0/0	c0003	1851	1	1	0	0	0	0	copy fasta	SPAST	chr2	32058556	32162637
SPATA12_chr3_57055664_57080432	1/1	c0001	573	432	97	73	198	15	47	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	c0002	573	6	0	3	1	1	1	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	c0003	573	1	1	0	0	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA12_chr3_57055664_57080432	0/0	c0004	573	1	0	0	1	0	0	copy fasta	SPATA12	chr3	57055664	57080432
SPATA13_chr13_24155720_24312069	1/0	c0001	3834	80	11	18	33	7	10	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/1	c0002	3834	74	12	6	42	0	13	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0003	3834	35	2	10	18	1	4	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0004	3834	29	2	1	23	1	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0005	3834	26	12	2	9	2	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0006	3834	23	5	1	15	0	2	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0007	3834	12	11	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0008	3834	10	7	3	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0009	3834	6	0	6	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0010	3834	4	4	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0011	3834	4	0	1	3	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0012	3834	4	1	2	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0013	3834	3	2	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0014	3834	3	1	2	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0015	3834	3	0	2	0	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0016	3834	2	0	0	1	0	1	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0017	3834	2	0	1	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0018	3834	2	0	2	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0019	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0020	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0021	3834	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0022	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0023	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0024	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0025	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0026	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0027	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0028	3834	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0029	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0030	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0031	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0032	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0033	3834	1	0	0	0	1	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0034	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0035	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0036	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069