JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA13_chr13_24155720_24312069	0/0	c0037	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0038	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0039	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0040	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0041	3834	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0042	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0043	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0044	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0045	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0046	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0047	3834	1	0	1	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0048	3834	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0049	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0050	3834	1	1	0	0	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0051	3834	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA13_chr13_24155720_24312069	0/0	c0052	3834	1	0	0	1	0	0	copy fasta	SPATA13	chr13	24155720	24312069
SPATA16_chr3_172884357_173146235	1/1	c0001	1710	68	15	20	18	1	12	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0002	1710	47	36	5	2	0	4	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0003	1710	28	1	9	12	0	6	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0004	1710	17	2	5	7	1	2	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0005	1710	9	8	0	0	0	1	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0006	1710	8	8	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0007	1710	5	0	0	4	0	1	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0008	1710	5	3	2	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0009	1710	3	3	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0010	1710	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0011	1710	1	1	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0012	1710	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0013	1710	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0014	1710	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0015	1710	1	0	0	0	0	1	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0016	1710	1	0	0	0	0	1	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0017	1710	1	0	0	1	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0018	1710	1	1	0	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA16_chr3_172884357_173146235	0/0	c0019	1710	1	0	1	0	0	0	copy fasta	SPATA16	chr3	172884357	173146235
SPATA17_chr1_217626344_217876696	0/0	c0001	1086	124	32	29	39	8	16	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	1/0	c0002	1086	67	20	9	28	3	6	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/1	c0003	1086	24	4	2	13	1	3	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0004	1086	16	14	2	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0005	1086	5	4	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0006	1086	5	0	0	4	0	1	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0007	1086	3	3	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0008	1086	2	0	0	2	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0009	1086	2	1	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0010	1086	1	0	0	1	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0011	1086	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0012	1086	1	1	0	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA17_chr1_217626344_217876696	0/0	c0013	1086	1	0	1	0	0	0	copy fasta	SPATA17	chr1	217626344	217876696
SPATA18_chr4_52046304_52102299	1/1	c0001	1617	190	60	22	79	7	20	copy fasta	SPATA18	chr4	52046304	52102299
SPATA18_chr4_52046304_52102299	0/0	c0002	1617	98	8	22	50	9	9	copy fasta	SPATA18	chr4	52046304	52102299