JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABHD5_chr3_43685938_43727725	0/0	c0006	1050	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0007	1050	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0009	1050	1	0	0	1	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	c0011	1050	1	0	0	0	0	1	copy fasta	ABHD5	chr3	43685938	43727725
ABHD6_chr3_58232792_58299734	1/1	c0001	1014	298	94	67	87	12	36	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	c0002	1014	2	0	0	0	2	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	c0003	1014	1	0	1	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	c0004	1014	1	0	0	1	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	1/1	c0001	1320	251	49	56	114	9	21	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0002	1320	61	29	6	24	2	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0003	1320	61	10	7	22	3	19	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0004	1320	3	3	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0005	1320	2	2	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0006	1320	2	2	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0007	1320	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0008	1320	1	0	1	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0009	1320	1	0	0	1	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0010	1320	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0011	1320	1	0	0	1	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	c0012	1320	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABI1_chr10_26741596_26865958	1/1	c0001	1446	356	75	64	171	12	32	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	c0002	1446	1	0	0	1	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	c0003	1446	1	1	0	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI2_chr2_203323394_203437169	1/1	c0001	1629	318	78	60	140	10	28	copy fasta	ABI2	chr2	203323394	203437169
ABI2_chr2_203323394_203437169	0/0	c0002	1629	2	2	0	0	0	0	copy fasta	ABI2	chr2	203323394	203437169
ABI3BP_chr3_100744156_100998421	0/1	c0001	5361	44	8	6	24	0	5	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0002	5361	24	4	6	13	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0003	5361	20	2	1	17	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	1/0	c0004	5361	16	8	1	3	2	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0005	5361	12	0	3	6	0	3	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0006	5361	9	0	2	5	0	2	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0007	5361	8	0	2	2	1	3	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0008	5361	8	2	2	1	2	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0009	5361	7	0	3	1	1	2	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0010	5361	5	0	4	1	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0011	5361	5	5	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0012	5361	4	4	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0013	5361	4	0	2	0	0	2	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0014	5358	4	4	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0015	5361	4	0	2	0	1	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0016	5358	3	2	1	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0017	5361	3	3	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0018	5361	3	0	0	3	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0019	5361	3	1	1	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0020	5361	2	0	0	2	0	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0021	5361	2	0	1	0	1	0	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0022	5361	2	0	1	0	0	1	copy fasta	ABI3BP	chr3	100744156	100998421
ABI3BP_chr3_100744156_100998421	0/0	c0023	5361	2	2	0	0	0	0	copy fasta	ABI3BP	chr3	100744156	100998421