JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31A3_chr9_66981304_66997550	0/0	c0004	4044	40	3	7	20	2	8	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0005	4044	14	7	5	1	1	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0006	4044	11	10	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0007	4044	10	0	5	0	3	2	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0008	4044	9	0	6	0	1	2	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0009	4044	9	9	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0010	4044	8	7	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0011	4044	5	0	0	5	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0012	4044	5	0	0	5	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0013	4044	5	5	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0014	4044	4	0	0	0	0	4	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0015	4044	4	4	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0016	4044	3	0	1	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0017	4044	3	0	0	3	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0018	4044	3	0	0	3	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0019	4044	2	1	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0020	4044	2	0	2	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0021	4044	2	0	0	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0022	4044	2	0	2	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0023	4044	2	2	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0024	4044	2	0	0	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0025	4044	2	0	0	2	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0026	4044	2	0	1	0	1	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0027	4044	2	2	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0028	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0029	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0030	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0031	4044	1	0	0	0	0	1	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0032	4044	1	0	0	0	0	1	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0033	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0034	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0035	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0036	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0037	4044	1	0	0	0	0	1	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0038	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0039	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0040	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0041	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0042	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0043	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0044	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0045	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0046	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0047	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0048	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0049	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0050	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0051	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0052	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0053	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550