JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31A3_chr9_66981304_66997550	0/0	c0054	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0055	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0056	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0057	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0058	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0059	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0060	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0061	4044	1	0	1	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0062	4044	1	0	0	1	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A3_chr9_66981304_66997550	0/0	c0063	4044	1	1	0	0	0	0	copy fasta	SPATA31A3	chr9	66981304	66997550
SPATA31A6_chr9_42178659_42194887	0/0	c0001	4032	54	8	13	24	3	6	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/1	c0002	4032	35	2	16	9	1	6	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	1/0	c0003	4032	26	5	3	8	5	4	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0004	4032	9	0	1	8	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0005	4044	6	0	0	6	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0006	4032	4	4	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0007	4032	3	1	0	2	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0008	4032	3	3	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0009	4032	2	0	2	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0010	4032	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0011	4032	2	1	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0012	4032	2	0	0	2	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0013	4032	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0014	4032	2	0	0	0	0	2	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0015	4032	2	2	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0016	4032	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0017	4032	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0018	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0019	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0020	4032	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0021	4032	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0022	4032	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0023	4032	1	0	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0024	4032	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0025	4032	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0026	4032	1	0	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0027	4032	1	0	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0028	4032	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0029	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0030	4032	1	0	0	0	1	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0031	4032	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0032	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0033	4032	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0034	4044	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0035	4044	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0036	4044	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0037	4032	1	0	0	1	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0038	4044	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0039	4032	1	0	0	0	0	1	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0040	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887