JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31A6_chr9_42178659_42194887	0/0	c0041	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0042	4032	1	1	0	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A6_chr9_42178659_42194887	0/0	c0043	4044	1	0	1	0	0	0	copy fasta	SPATA31A6	chr9	42178659	42194887
SPATA31A7_chr9_61185036_61201280	0/0	c0001	4044	48	12	11	22	0	3	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/1	c0002	4044	47	1	8	29	3	5	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0003	4044	12	0	0	12	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0004	4044	11	0	4	7	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0005	4044	11	0	2	9	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0006	4044	10	1	1	5	0	3	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0007	4044	9	0	7	2	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0008	4044	6	1	1	0	0	4	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0009	4044	6	0	5	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0010	4044	3	0	0	3	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0011	4044	3	0	2	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0012	4044	3	0	2	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0013	4044	3	2	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0014	4044	2	1	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0015	4044	2	2	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0016	4044	2	0	2	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0017	4044	2	0	0	2	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0018	4044	2	2	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0019	4044	2	1	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0020	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0021	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0022	4044	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0023	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0024	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0025	4044	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0026	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0027	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0028	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0029	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0030	4044	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0031	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0032	4044	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0033	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0034	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0035	4044	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0036	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0037	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0038	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0039	4032	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0040	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0041	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0042	4044	1	0	1	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0043	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0044	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0045	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0046	4044	1	0	0	0	0	1	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0047	4032	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280