JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31A7_chr9_61185036_61201280	0/0	c0048	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0049	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0050	4044	1	0	0	0	1	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0051	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0052	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0053	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0054	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0055	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0056	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0057	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0058	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0059	4044	1	1	0	0	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31A7_chr9_61185036_61201280	0/0	c0060	4044	1	0	0	1	0	0	copy fasta	SPATA31A7	chr9	61185036	61201280
SPATA31C1_chr9_87912962_87928657	0/0	c0001	3567	75	12	9	49	0	5	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/1	c0002	3567	68	8	18	20	5	16	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	1/0	c0003	3567	42	11	21	0	5	4	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0004	3549	39	1	10	27	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0005	3567	36	0	4	22	1	9	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0006	3567	16	13	1	2	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0007	3567	8	8	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0008	3567	7	0	1	0	1	5	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0009	3567	7	7	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0010	3567	7	0	0	4	0	3	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0011	3549	5	0	0	5	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0012	3567	5	1	3	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0013	3585	5	5	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0014	3567	3	0	0	3	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0015	3567	3	0	0	3	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0016	3567	3	0	3	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0017	3567	3	1	0	0	2	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0018	3567	2	0	2	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0019	3567	2	0	0	2	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0020	3585	2	2	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0021	3549	2	0	0	1	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0022	3567	2	2	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0023	3567	2	0	0	2	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0024	3567	2	0	2	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0025	3567	2	0	1	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0026	3567	2	1	1	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0027	3567	2	2	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0028	3378	2	0	2	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0029	3567	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0030	3567	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0031	3567	1	0	1	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0032	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0033	3567	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0034	3567	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0035	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0036	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0037	3567	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657