JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31C1_chr9_87912962_87928657	0/0	c0038	3567	1	0	0	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0039	3567	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0040	3567	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0041	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0042	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0043	3549	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0044	3549	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0045	3549	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0046	3567	1	0	0	0	0	1	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0047	3584	1	0	1	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0048	7040	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0049	7040	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0050	10510	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0051	10511	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0052	3567	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0053	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0054	3567	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0055	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0056	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0057	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0058	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0059	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0060	3567	1	0	0	0	1	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0061	3567	1	1	0	0	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C1_chr9_87912962_87928657	0/0	c0062	3549	1	0	0	1	0	0	copy fasta	SPATA31C1	chr9	87912962	87928657
SPATA31C2_chr9_88124305_88143475	0/0	c0001	3405	83	9	14	53	0	7	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	1/1	c0002	3405	81	12	38	2	13	14	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0003	3405	46	4	6	29	2	5	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0004	3405	45	0	1	43	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0005	3441	23	0	0	22	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0006	3216	22	1	7	10	2	2	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0007	3405	13	11	2	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0008	3405	10	0	0	10	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0009	3216	8	0	6	2	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0010	3405	7	6	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0011	3405	7	0	0	7	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0012	3405	6	5	1	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0013	3405	6	6	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0014	3216	6	2	0	3	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0015	3405	5	0	0	5	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0016	3408	5	5	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0017	3405	5	1	1	0	0	3	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0018	3405	5	0	0	4	0	1	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0019	3405	4	4	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0020	3405	3	0	0	3	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0021	3405	3	3	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0022	3405	3	0	2	0	1	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0023	3441	2	0	0	0	0	2	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0024	3405	2	2	0	0	0	0	copy fasta	SPATA31C2	chr9	88124305	88143475
SPATA31C2_chr9_88124305_88143475	0/0	c0025	3405	2	0	0	0	0	2	copy fasta	SPATA31C2	chr9	88124305	88143475