JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATXN1_chr6_16294112_16766460	0/0	c0054	2454	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0055	2454	1	0	0	0	0	1	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0056	2454	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0057	2430	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0058	2439	1	0	1	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0059	2442	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0060	2439	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0061	2442	1	0	0	1	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN1_chr6_16294112_16766460	0/0	c0062	2439	1	1	0	0	0	0	copy fasta	ATXN1	chr6	16294112	16766460
ATXN2L_chr16_28817999_28842232	0/1	c0001	3228	313	28	64	176	12	32	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0002	3228	24	23	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0003	3228	12	12	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0004	3228	6	6	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	1/0	c0005	3228	3	2	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0006	3228	2	2	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0007	3228	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0008	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0009	3228	1	0	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0010	3228	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0011	3228	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0012	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0013	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0014	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0015	3228	1	0	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0016	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0017	3277	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0018	3228	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0019	3228	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0020	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0021	3228	1	0	1	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0022	3228	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0023	3216	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0024	3228	1	1	0	0	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0025	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0026	3228	1	0	0	0	0	1	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0027	3228	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2L_chr16_28817999_28842232	0/0	c0028	3223	1	0	0	1	0	0	copy fasta	ATXN2L	chr16	28817999	28842232
ATXN2_chr12_111447214_111604315	0/1	c0001	3465	84	14	16	32	2	19	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0002	3465	75	7	11	54	0	3	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0003	3465	68	17	7	37	1	6	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0004	3468	27	25	2	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0005	3468	7	2	2	2	0	1	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0006	3468	4	2	0	1	0	1	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0007	3468	3	3	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0008	3465	3	0	0	3	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0009	3459	2	2	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0010	3471	2	2	0	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	1/0	c0011	3468	2	0	1	0	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0012	3465	2	0	0	2	0	0	copy fasta	ATXN2	chr12	111447214	111604315
ATXN2_chr12_111447214_111604315	0/0	c0013	3456	2	0	0	2	0	0	copy fasta	ATXN2	chr12	111447214	111604315