JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31D4_chr9_81923428_81939998	0/0	c0024	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0025	2754	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0026	2754	1	0	1	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0027	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0028	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0029	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0030	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0031	2754	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0032	2754	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0033	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0034	2754	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0035	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0036	2754	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0037	2754	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0038	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0039	2754	1	0	0	0	0	1	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0040	2754	1	0	0	1	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31D4_chr9_81923428_81939998	0/0	c0041	2754	1	1	0	0	0	0	copy fasta	SPATA31D4	chr9	81923428	81939998
SPATA31E1_chr9_87877877_87893903	0/0	c0001	4338	100	9	28	41	7	15	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	1/1	c0002	4338	71	4	21	20	5	19	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0003	4338	70	3	9	52	3	3	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0004	4338	57	1	3	53	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0005	4338	24	0	1	19	0	4	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0006	4338	24	23	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0007	4338	21	10	7	0	0	4	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0008	4338	14	2	0	11	0	1	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0009	4338	8	8	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0010	4338	6	5	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0011	4338	4	4	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0012	4338	4	0	0	4	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0013	4338	3	3	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0014	4338	3	2	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0015	4338	3	0	1	2	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0016	4338	2	0	2	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0017	4338	2	0	0	0	0	2	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0018	4338	2	0	0	2	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0019	4338	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0020	4338	2	0	1	0	1	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0021	4338	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0022	4338	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0023	4338	2	2	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0024	4338	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0025	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0026	4338	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0027	4338	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0028	4338	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0029	4338	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0030	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0031	4338	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0032	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903