JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31E1_chr9_87877877_87893903	0/0	c0033	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0034	4338	1	0	0	1	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0035	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0036	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0037	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0038	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0039	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0040	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0041	4338	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0042	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0043	4338	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0044	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0045	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0046	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0047	4338	1	0	1	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0048	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31E1_chr9_87877877_87893903	0/0	c0049	4338	1	1	0	0	0	0	copy fasta	SPATA31E1	chr9	87877877	87893903
SPATA31F1_chr9_34718053_34734488	0/1	c0001	4008	120	9	24	58	9	19	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0002	4008	111	9	32	57	5	8	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0003	4008	41	0	0	36	1	4	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0004	4008	37	3	14	9	2	9	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0005	4008	24	0	0	24	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0006	4008	21	18	3	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0007	4008	20	18	2	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0008	4008	13	10	1	1	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0009	4008	7	0	1	3	0	3	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0010	4008	7	0	0	7	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0011	4008	6	6	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0012	4008	5	5	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0013	4008	4	0	4	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0014	4008	3	3	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0015	4008	2	2	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	1/0	c0016	4008	2	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0017	4008	2	0	2	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0018	4008	2	0	0	2	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0019	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0020	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0021	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0022	4008	1	0	0	0	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0023	4008	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0024	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0025	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0026	4008	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0027	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0028	4008	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0029	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0030	4008	1	0	0	0	1	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0031	4008	1	0	1	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0032	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0033	4008	1	0	0	0	0	1	copy fasta	SPATA31F1	chr9	34718053	34734488