JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA31F1_chr9_34718053_34734488	0/0	c0034	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0035	4008	1	0	1	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0036	4008	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0037	4008	1	1	0	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0038	4008	1	0	1	0	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F1_chr9_34718053_34734488	0/0	c0039	4008	1	0	0	1	0	0	copy fasta	SPATA31F1	chr9	34718053	34734488
SPATA31F3_chr9_34884066_34900764	1/0	c0001	627	170	56	23	72	4	14	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	c0002	627	102	16	21	46	3	16	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/1	c0003	627	99	7	7	71	7	6	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	c0004	626	43	0	21	13	2	7	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	c0005	627	13	9	3	0	0	1	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	c0006	627	5	4	1	0	0	0	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	c0007	627	1	0	0	1	0	0	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA31F3_chr9_34884066_34900764	0/0	c0008	627	1	0	0	1	0	0	copy fasta	SPATA31F3	chr9	34884066	34900764
SPATA32_chr17_45249393_45267094	1/1	c0001	1155	292	73	43	145	10	19	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0002	1155	103	6	25	49	4	19	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0003	1155	9	9	0	0	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0004	1155	3	3	0	0	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0005	1155	3	3	0	0	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0006	1155	1	1	0	0	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA32_chr17_45249393_45267094	0/0	c0009	1155	1	1	0	0	0	0	copy fasta	SPATA32	chr17	45249393	45267094
SPATA33_chr16_89652836_89675458	1/1	c0001	423	409	94	69	180	17	47	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	c0002	423	6	5	1	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	c0003	423	3	0	2	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	c0004	423	1	1	0	0	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	c0005	423	1	0	0	1	0	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	c0006	423	1	0	0	0	1	0	copy fasta	SPATA33	chr16	89652836	89675458
SPATA33_chr16_89652836_89675458	0/0	c0007	423	1	0	0	0	0	1	copy fasta	SPATA33	chr16	89652836	89675458
SPATA3_chr2_230991121_231013040	0/0	c0001	552	107	11	18	59	7	12	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	1/1	c0002	579	100	18	19	51	1	9	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0003	579	76	25	15	24	4	8	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0004	552	57	9	11	28	3	6	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0005	552	57	5	5	41	1	5	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0006	579	24	10	7	4	0	3	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0007	579	3	1	0	1	0	1	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0008	579	2	2	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0009	579	2	0	0	0	0	2	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0010	579	2	2	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0011	579	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0012	579	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0013	552	1	0	1	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0014	552	1	1	0	0	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0015	552	1	0	0	1	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA3_chr2_230991121_231013040	0/0	c0016	552	1	0	0	1	0	0	copy fasta	SPATA3	chr2	230991121	231013040
SPATA45_chr1_212825141_212852649	0/0	c0000	0	11	1	2	5	0	3	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	0/0	c0001	297	248	77	34	103	12	22	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	1/1	c0002	297	126	16	28	59	4	17	copy fasta	SPATA45	chr1	212825141	212852649
SPATA45_chr1_212825141_212852649	0/0	c0003	297	17	0	0	17	0	0	copy fasta	SPATA45	chr1	212825141	212852649