JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA46_chr1_162368203_162381854	0/1	c0001	786	254	72	30	113	8	30	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0002	786	181	15	43	103	3	17	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0003	786	24	0	9	11	2	2	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0004	786	14	13	0	0	0	1	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0005	786	1	0	0	0	1	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	1/0	c0006	786	1	0	0	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0007	786	1	0	0	1	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0008	786	1	0	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA46_chr1_162368203_162381854	0/0	c0009	786	1	0	1	0	0	0	copy fasta	SPATA46	chr1	162368203	162381854
SPATA48_chr7_50090883_50164256	0/1	c0001	1317	138	43	28	48	7	11	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0002	1317	71	6	23	24	5	13	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	1/0	c0003	1317	62	11	15	20	3	12	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0004	1317	23	16	0	0	0	7	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0005	1317	16	11	0	0	1	4	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0006	1317	4	4	0	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0007	1317	3	0	0	2	0	1	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0008	1317	2	0	0	2	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0009	1317	2	0	2	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0010	1317	2	0	0	2	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0011	1317	1	0	1	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0012	1317	1	0	0	0	0	1	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0013	1317	1	1	0	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0014	1317	1	0	1	0	0	0	copy fasta	SPATA48	chr7	50090883	50164256
SPATA48_chr7_50090883_50164256	0/0	c0015	1317	1	0	0	0	0	1	copy fasta	SPATA48	chr7	50090883	50164256
SPATA4_chr4_176179579_176200585	0/0	c0001	918	126	15	11	86	2	12	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0002	918	117	21	24	56	7	9	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	1/0	c0003	918	114	40	29	27	2	15	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/1	c0004	918	75	8	8	49	3	6	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0005	914	8	0	5	0	2	1	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0006	914	7	0	5	0	1	1	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0007	918	4	4	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0008	918	3	3	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0009	918	1	1	0	0	0	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA4_chr4_176179579_176200585	0/0	c0010	918	1	0	0	0	1	0	copy fasta	SPATA4	chr4	176179579	176200585
SPATA5L1_chr15_45397336_45426415	0/0	c0001	2262	211	26	35	134	3	13	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	1/1	c0002	2262	98	6	26	36	4	24	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0003	2262	50	44	5	0	0	1	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0004	2262	6	6	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0005	2262	5	0	0	5	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0006	2262	4	0	0	4	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0007	2262	3	3	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0008	2262	2	0	1	0	1	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0009	2262	2	2	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0010	2262	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0011	2262	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0012	2262	1	0	0	0	0	1	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0013	2262	1	0	0	1	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0014	2262	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0015	2262	1	0	0	0	0	1	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0016	2262	1	0	1	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415